Glyma04g08940 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g08940

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7083013
stop:	7086079
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11580	AT	Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family protein \| chr5:3718913-3721125 FORWARD LENGTH=553	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chromatin binding	SoyBase	N/A	ISS
GO:0008536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding	SoyBase	N/A	ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF10	Panther	UVB-RESISTANCE PROTEIN UVR8-RELATED	JGI		ISS
PF00415	PFAM	Regulator of chromosome condensation (RCC1) repeat	JGI		ISS
UniRef100_G7J3F9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RCC1 and BTB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J3F9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JUV9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUV9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g08940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g084400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08940

Limit To All Plant Sequences

>Glyma04g08940.1   sequence type=CDS   gene model=Glyma04g08940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGACGCCGGCGGGAAGATTGTGAAGTCCGGCCAGGTGTCGCGTAAGGTGGTTGACGTGGCTGCGGGGGAAGCACACACTCTCCTTCTTACTGGGGATGGCAGTGTTTACTGTTGGGGCAAGGGAATGTTTGGACGGCTCGGGACTGGGGCAGAAAAGGACGAGCTTTTACCAGTACAACTCAACTTTGGATACCCAAATCCAAACGGAACAGAAGGCACTTTCAAAATAGTGGGAATTGCTGCCGGTGCTTATCACAGTCTTGCTCTAGCAGGTTATCTAACCCTTCATACTTCACACCTTCCAATTTCCCTTTTTTCAAAGTTTGTTGAATTTATATTATGTACTAGCATCTGTATCCTTGACTACTGTATGGATGGTCAACTTGGTATAAATGGAGAGGAATCACATGACAATGAATATGCTGTTGGAGACAATTCTCTAGTGCCCCGCATACTGAACAAGTTTCTTGAATTGCATCCCCCTGATTCTTCTTCATCGGGTGTGTCTGAAGCAGAAAGTAAAACACCACTTAAGATATGTGCTGTCAAAGCTGGAGGAATGATGTCTCTAGCTATTGATAACCATGGGACCCTGTGGATGTGGGGAAACTGCCCACGACAAAGCAAAGAAGGTGGGTTAGCACTTGTAAGCAGTTTCACTCCAACTCCAGTTTGGGATTTTCAGGGCCACACTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCTCTGGTTAGTGCTGGAGAGACATACAATGGTGAAGATCTAGTGTGCTACTCTTGGGGTTATAACAGCCGTGGCCAATTAGGCTTGGGGGATCGAGAGAGCAGACTGCATCCGGAAGTTGTTAGAACATTTGACGAGGAGTCCCCTTATGAGGTAGCATGTGGTGCCTTTCACACTGCTTTGCTCACTCGTAAAAAGAAACCTAGTGACACAGTAGAAAGCACATGCTGGACCTTTGGCCTTGGGGATAATGGCCAGCTTGGGCATGGAACTACACAAAGCACATTATTTCCTACACCTGTTAAAGAATTGCCACAAAATGTATCACTTATCTGTGTTGACTGTGGTTTGTTTCATACTAGTGTTGTTTCCTCAGATGGGGATGTGTGGTCATGGGGAATGGAGAAGGGCCTTGGCTTATGCCCTGATGCTAGTCGTGCTGGAACAGATTCGGGCGATGCCCTCTCTCCCCGTCTCATGTCATGCCAGCCCCATCAACTTAAATTTCCAGATCCAGTTAAAGTTGCATGTGGGGCCGCACATACTGTTATTGTTGCACGAAAGGGATATAGAATGTGGTCTTGGGGTAGGGGAAGGAGTGGAGTTCTTGGAGATGGTAAAGGGTTTGATTGTTACACTCCTACAGCTGTGCTATGGCCTTCTACAATGGAGGATTCTGAGGAAGAGGAAGTAAAAAGCTCCGGTGAGCAAGATAAGGCTAGAGAAAAGGAGACTGAATTGGCAACAGAAACAGAAGAGAAATTATCTTCAGCATTGAATGAGCTGAAGCTGCTTCAAACAAAGCTATCTATAATGGAAAAATATGCTAGTATACTTCATGGTTCTATTTTTGGAAAACCTTTTGATGAACAAGATATCCCTGTTTCATTGCGGAATTCAGGTTCATTTGACATTGCAAAAGAATGGGAGAGTATGTTGGAGGCAGCAGATCAAAGGAAGCTGATTAGGTTGGAAATGTTTTACCGTGACATGCTTACTGGAGTGAAAGATGAACTAATGAAGAGAAGGATCAAGGAAATTGTACAAGAGTGTCTCCAATCTTCAGAGGTGAAAAAATAG

Predicted protein sequences of Glyma04g08940

Limit To All Plant Sequences

>Glyma04g08940.1   sequence type=predicted peptide   gene model=Glyma04g08940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDAGGKIVKSGQVSRKVVDVAAGEAHTLLLTGDGSVYCWGKGMFGRLGTGAEKDELLPVQLNFGYPNPNGTEGTFKIVGIAAGAYHSLALAGYLTLHTSHLPISLFSKFVEFILCTSICILDYCMDGQLGINGEESHDNEYAVGDNSLVPRILNKFLELHPPDSSSSGVSEAESKTPLKICAVKAGGMMSLAIDNHGTLWMWGNCPRQSKEGGLALVSSFTPTPVWDFQGHTVVKVACGNEHVVALVSAGETYNGEDLVCYSWGYNSRGQLGLGDRESRLHPEVVRTFDEESPYEVACGAFHTALLTRKKKPSDTVESTCWTFGLGDNGQLGHGTTQSTLFPTPVKELPQNVSLICVDCGLFHTSVVSSDGDVWSWGMEKGLGLCPDASRAGTDSGDALSPRLMSCQPHQLKFPDPVKVACGAAHTVIVARKGYRMWSWGRGRSGVLGDGKGFDCYTPTAVLWPSTMEDSEEEEVKSSGEQDKAREKETELATETEEKLSSALNELKLLQTKLSIMEKYASILHGSIFGKPFDEQDIPVSLRNSGSFDIAKEWESMLEAADQRKLIRLEMFYRDMLTGVKDELMKRRIKEIVQECLQSSEVKK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain