Glyma04g08930 - SoyBase

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Report for Sequence Feature Glyma04g08930

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7077011
stop:	7082516
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25800	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF810) \| chr2:11006138-11009728 REVERSE LENGTH=987	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0030243	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF05664	PFAM	Protein of unknown function (DUF810)	JGI		ISS
UniRef100_UPI00023394EB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023394EB related cluster n=1 Tax=unknown RepID=UPI00023394EB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08930

Paralog	Evidence	Comments
Glyma06g09020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g084300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08930

Limit To All Plant Sequences

>Glyma04g08930.1   sequence type=CDS   gene model=Glyma04g08930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCATCTCTTCAGAGACCTCTCATTGGGCCACTCCAAGAGAGACTCCACGCCGCCGCTGCCGCCACCGCCGATAATGCCTCCCAAGCCCGCCGCCGTCACCGCCGCCGACGACCTTCCCTCTCCGCTCGGCCAACTCTCCGCCAGTCTCTCCGATTCCGACCTCGCGCTAACGGCGTACGAGATCTTCGTCGCCGCGTGCCGCACCTCCTCCGGCAAGCCTCTCAGTTCCGCTGCCAACCACTCCTCCACCAATTCGCCGAGTCAGAACTCTCCGAACTCGCCCGCGCTCCAGCGATCCATAACCTCCACAGCCGCCAGCAAGGTCAAGAAGGCCTTCGGTCTGAAATCTCCCGGTTCGGCCTCCAGAAAGAGCCCTGGCTCCGGTTCGGGCCAGGGAAAGCCCAAGCGCCCTCTCACCGTCGGCGAACTCATGCGCAACCAGATGAGGGTTTCCGAAGCCATGGATTCGCGCGTTCGACGCGCGCTGCTCAGGATTTCCGCTGGCCAGGTTGGAAGAAGGATTGAGTCTGTGGTGGTTCCGCTTGAGTTGTTGCAGCAGCTCAAGGCTTCGGATTTTACTGATCAGCAAGAGTACGATGACTGGCAGAAGAGGACCTTGAAGGTTCTGGAAGCTGGTTTGATTTTGCATCCTCACATGCCGTTGGATAAGTCCAATTCCGCTGTGCAGCGTCTGCGGCAGATTGTTCATGCTGCATTGGATAAGCCTATAGAAACCGGGAAGAATACTGAGTCTATGCAGGTTCTTCGTAGTGCTGTTATGTCTCTTGCGAATAGGTCATATGACGGGTCTTATGTTGATTCGTGCCACTGGGCGGATGGGATTCCTCTGAATCTGCGGCTTTATGAAATGCTTCTGCAATCCTGCTTTGATGCTAATGATGAATCATCGATTATTGAGGAATTTGATGAGCTAATGGAACAAATCAAGAAGACCTGGGGAATCCTTGGATTGAATCAGACGCTGCATAATCTCTGTTTCACTTGGGTTTTGTTTCACCGGTTTGTCGTGACTGGCCAGCTGGACTTGGACTTGCTGTCTGCTGCTGACGGCCAGCTGGCGGAAGTTGCGAAAGATGCAAAGACAACAAAAGATGCAGAATATTCCAAAGTTTTGAGTTCTACATTGACTTCAATTATGGGGTGGGCTGAGAAAAGGCTCCTTGCTTATCACGAAACTTTTGACCGGGGAAATGTTGAAACCATGCAGGGCATTGTCTCTTTAGGGGTAGCAGCAGCTAAGATTTTGGTTGAAGATATATCCAATGAGTATCGCCGGAGGAGAAAAAATGAAGTCAATGTGGCACGTGAAAGAATTGAAACTTACATCAGGTCATCACTGCGTACTGCTTTTGCCCAGATAATGGAGAAAGCTGACTCCAGCAGGAGAGCGTCCAAAAATCAGCCAAATGCTCTTCCTGGCCTTGTCATCCTTGCAAAGGATGTAGGTAGCCTGGCAGTCAATGAAAAGCAAGTGTTCAGTCCAATACTTAAGAGATGGCATCCTTTGGCAGCAGGTCTTGCTGTGGCCACCCTTCATGCATGCTATGGAAACGAATTGAAGCAATTCATATCAGGAATCACAGAATTGACACCTGATGCTGTTCAAGTTTTGAGAGCCGCAGATCAGTTGGAGAAAGACCTTGTGCAGATAGCTGTTGAGGATTCAGTGGAAAGTGAAGATGGTGGTAAGGCAATTATCCGTGAGATGCCTCCTTACGAGGCTGAAGGTGCAATTGCCAATCTTGTGAAAATATGGATCAAGACTAGAATAGACAGACTGAAGGAATGGGTCGACAGAAATCTGCAGCAAGAGCTGTGGAGTGCTCAAGCAAATCAGGAAGGATATGCCCCATCTGCTGTTGAAGTTTTGCGAATTATAAATGAAACTTTAGATGCTTTCTTTCAGCTTCCAATACCGATGCATCCTGCATTGCTTCCTGAAGTAATGAATGGTCTTGACAGATGCCTTCAGTACTATGTTATCAAAGCAAAATCTGGCTGCGGATCACGGAACACATTTCTTCCAACAATGCCTGCGTTGACCAGATGCACTATTGGTTCAAAGTTTCAGGGCTTTGGGAAGAAAAAGGATAAATCTCCAAATCCTCAGAAGAGAAATCCTCAGGTTGCAACAAATGGGGATAGCTCCTCGGGAATACCCCAACTCTGTGTTCGCATAAATACTTTGCAATGGATCCTGGGTGAATTTGATGTTCTGGAAAAAAGAATAATTACCCTTTTACGGAACTCTGAATCTGCTCATGTAGAAGATTTTTCAAATGGATTAGCAAAGAAGTTTGAACTATCTCCAGCTGCATGTCTTGAAGGAATTCAGCAACTCTGTGAAGCTGCAGCATATAGAATTGTCTTCCATGATCTAAGCCAGGTATTATGGGATGGTTTATATGTTGGGGATCCAGCATCTTCAAGGATTGAGCCATTTCTTCAGGAACTTGAGCGGAAGTTAATGTTCATTTCAGATACTGTTCATGAAAGAATTCGCACACGAATTATTACTGAAATAATGAGAGCTTCCTTTGATGGATTCTTGCTTGTATTGCTTGCTGGAGGTCCCTCACGTTCTTTTACCCGGAAGGACTCTCAGATCATAGAGGATGATTTCAAGTTTCTCAAGGAGTTGTTTTGGGCAAATGGGGATGGTTTGCCTTCTGAATTAATAGATAAATTTTCAACTACTGCAAGGTCTATCCTTCCCCTTTTCAGAACTGACACAGAGACCCTCATTGAGCAGTTCAAACGGTTGACCATGGAGACATATAAATCCTCTGCCAGGTCCAAACTCCCATTACCTCCAACTTCTGGACAGTGGAATCCATCAGAACCAAACACATTGTTACGTGTTTTGTGCTATAGAAATGATGAATCAGCTTCTAAGTTTCTGAAGAAGGCATATGATCTGCCTAAGAAACTTTAA

Predicted protein sequences of Glyma04g08930

Limit To All Plant Sequences

>Glyma04g08930.1   sequence type=predicted peptide   gene model=Glyma04g08930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHLFRDLSLGHSKRDSTPPLPPPPIMPPKPAAVTAADDLPSPLGQLSASLSDSDLALTAYEIFVAACRTSSGKPLSSAANHSSTNSPSQNSPNSPALQRSITSTAASKVKKAFGLKSPGSASRKSPGSGSGQGKPKRPLTVGELMRNQMRVSEAMDSRVRRALLRISAGQVGRRIESVVVPLELLQQLKASDFTDQQEYDDWQKRTLKVLEAGLILHPHMPLDKSNSAVQRLRQIVHAALDKPIETGKNTESMQVLRSAVMSLANRSYDGSYVDSCHWADGIPLNLRLYEMLLQSCFDANDESSIIEEFDELMEQIKKTWGILGLNQTLHNLCFTWVLFHRFVVTGQLDLDLLSAADGQLAEVAKDAKTTKDAEYSKVLSSTLTSIMGWAEKRLLAYHETFDRGNVETMQGIVSLGVAAAKILVEDISNEYRRRRKNEVNVARERIETYIRSSLRTAFAQIMEKADSSRRASKNQPNALPGLVILAKDVGSLAVNEKQVFSPILKRWHPLAAGLAVATLHACYGNELKQFISGITELTPDAVQVLRAADQLEKDLVQIAVEDSVESEDGGKAIIREMPPYEAEGAIANLVKIWIKTRIDRLKEWVDRNLQQELWSAQANQEGYAPSAVEVLRIINETLDAFFQLPIPMHPALLPEVMNGLDRCLQYYVIKAKSGCGSRNTFLPTMPALTRCTIGSKFQGFGKKKDKSPNPQKRNPQVATNGDSSSGIPQLCVRINTLQWILGEFDVLEKRIITLLRNSESAHVEDFSNGLAKKFELSPAACLEGIQQLCEAAAYRIVFHDLSQVLWDGLYVGDPASSRIEPFLQELERKLMFISDTVHERIRTRIITEIMRASFDGFLLVLLAGGPSRSFTRKDSQIIEDDFKFLKELFWANGDGLPSELIDKFSTTARSILPLFRTDTETLIEQFKRLTMETYKSSARSKLPLPPTSGQWNPSEPNTLLRVLCYRNDESASKFLKKAYDLPKKL*

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