SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G25830 | AT | Annotation by Michelle Graham. TAIR10: YebC-related | chr2:11019091-11021665 REVERSE LENGTH=331 | SoyBase | E_val: 2.00E-131 | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0042819 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vitamin B6 biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| KOG2972 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12532 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF01709 | PFAM | Domain of unknown function DUF28 | JGI | ISS | |
| UniRef100_I0YN65 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Probable transcriptional regulatory protein COCSUDRAFT_37977 n=1 Tax=Coccomyxa subellipsoidea C-169 RepID=I0YN65_9CHLO | SoyBase | E_val: 3.00E-55 | ISS |
| UniRef100_I1JUV7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JUV7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g08920 not represented in the dataset |
Glyma04g08920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g09010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g084200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g08920.2 sequence type=transcript gene model=Glyma04g08920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATACATAGTGTTGAAAAGAGAAATACTTATGTTGAAGAGTTGAAGTTCCGTGGCGTCACCCTGCATGCGTGTGGGTTGAATGAGGAATAAAACGACGATGAGAGCAGTGCTTCAGCTTCAGGCTTTGACAGCTCGGCTTTCACTTTCCCCCTCCAACTTCGTTCGCCGCAAAAGCTTATGGTTCGATGCAAATAGGGATAACTCCCAAGTGAGAAGGATATGGCCTTCCACTCCTGTTTGTATGGGTCGCCGTTCCATCAAAATTGCCGGGAGAAAGGGAGCCCAAGATGCAAAGAAAACAAAACTATACTCAAGGATCGGAAAGGAAGTCGTGTCTGCTGTAAAGAGAGGTGGTCCAAATGTAACATCCGATTCAGTTTTGGCTGCTGTACTTGGGAAAGCCAAGGAGCTTGATCTCCCTAAAGATATTGTTGACCGCAATATCAAGAGAGCTAATGAGAAAGGACAAGAGGCTTATATCGAGAAAGCCTACAAGGTTTATGGTTATGGAGGAGTTAGTATGGTAGTTGAGGTATCAACTGATAAGGTACATCGTTCAGTGACAAAGATTAGAGAAGTGATAAGGGACTATGGAGGAAAGATGGCAGATTCTGGATCTGTGACGTTTAAGTTTAAACGTGTTCGGTTAGTAAATATTAAAGCCACTAATGCTGATAAAGATCAGCTGCTTGCCATTGCTTTAGATGCTGGAGCTGAGGATGTAATTGAACCTCCAACTTATGAAGATGACACTGAAGAGGATAGGTCAGAAAGGTATTATAAAATTGTAGGTTCTTCAGAGAACTTTTCATTTATACCATCTAAGCTGCGTGATAATAGTTCTGAGCTTCTTCCAAATACCCTGGTTGTGGTTTGTTTCTAATTTCTATTGGCTACTGTATATGCTATTTCATTTCTTGGATTTTCATTTCTCTTTTCTTCCTTCTCCTTTTGGATTCATATAATACAAATATTGACAAGCAAACAATCCGAAATGTGTAAGTTTAATCTGTGATGTGGCAATATGCAATTTCTTAAATGAGTTTGGGAGTTGCCTTTTCCTGATTCACTGTTCTGTTCTTCTGCCTGTATTGCATTTTTAAAATGTTCCATTTGCAGACAAACTTTTCCTTTTTAGGGAAGCTTTCTTGGAGACTATAAATATTATTTCTAACAGTTGTTTTCCAGATTTACATGTTACAAAATCTCCCCAATTATATTTGGATTTGACTCTTTTAAAGTAAGCCAAGGTAAAGTACGTAATCTCGGTCATCAATGAGAAAATCAACTGTTGATATTTCAACACATGCATGATTTGTTAGGCATCAGCATGTGCACGTAACATGACTGTTGATTTTTTTCATCAATGTTTGAGATTTGTTACTTTACCCTCAAAAGGATAAAGTTAGAATTAATGTCTCATGTGACATGTATGTGACTTATGTAAGGAATAATAAATAAATAAATAATAATTAAAGACTAAATTATAATTGGGTTAGATAAAATAAGTTTCTAAAGGTAACTGCTACTTGATGGAAGTAGTAAAAGGGGTTAATATCCACTAACGTGAAACAAGGTCATCTTCCTGACAAAAAAGTGTTTTCTCTAACCTCTAGTCATCATGAACGTAGAAAGACAGAAAAAATAGTCAAGGAAGCGAAATCTTGTTTTTCTTTTCTTCCAATGAATCAAAGTACACCGGAGAGAAGTCTCACTATCGAAAAAGGTAGATGATGAGGCTATGGACTTGAACAAGGAACTTATGAGCAAACTACTTGAGCTTGATGATGTTGATGCTGTTTATACAGATCAGAAATAGTAATTTTTATATGTTTAAAAGCTGTTCAGCAGACAACTCAAGGTTATTCTTCGACCCTGGGAGTTCCTATCACATTATGTACGGTCTATTTGCAAAATGAAAATAGGCTCTAAAAATTATTGGGGATGCCTCAGGTGAGAAATTTGTAGATCTGACACATGTATACCTACTATTTAATCTGTTTCCTTTTTTTTTTTTTTGAGGGTGGCCAGAGGAATGCTTTCTGGGAAGGGAATTTCATTTTGAAATTATTTGATTCAAAACCGAGGATATTTAAATCATGTATCGTCTTATATGACAAACTACAAAGTCCAATAATAATAAAACAGTAAATCTTGATTCCTTCTGGTTGGGTACGATGATCCCGG >Glyma04g08920.3 sequence type=transcript gene model=Glyma04g08920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATACATAGTGTTGAAAAGAGAAATACTTATGTTGAAGAGTTGAAGTTCCGTGGCGTCACCCTGCATGCGTGTGGGTTGAATGAGGAATAAAACGACGATGAGAGCAGTGCTTCAGCTTCAGGCTTTGACAGCTCGGCTTTCACTTTCCCCCTCCAACTTCGTTCGCCGCAAAAGCTTATGGTTCGATGCAAATAGGGATAACTCCCAAGTGAGAAGGATATGGCCTTCCACTCCTGTTTGTATGGGTCGCCGTTCCATCAAAATTGCCGGGAGAAAGGGAGCCCAAGATGCAAAGAAAACAAAACTATACTCAAGGATCGGAAAGGAAGTCGTGTCTGCTGTAAAGAGAGGTGGTCCAAATGTAACATCCGATTCAGTTTTGGCTGCTGTACTTGGGAAAGCCAAGGAGCTTGATCTCCCTAAAGATATTGTTGACCGCAATATCAAGAGAGCTAATGAGAAAGGACAAGAGGCTTATATCGAGAAAGCCTACAAGGTTTATGGTTATGGAGGAGTTAGTATGGTAGTTGAGGTATCAACTGATAAGGTACATCGTTCAGTGACAAAGATTAGAGAAGTGATAAGGGACTATGGAGGAAAGATGGCAGATTCTGGATCTGTGACGTTTAAGTTTAAACGTGTTCGGTTAGTAAATATTAAAGCCACTAATGCTGATAAAGATCAGCTGCTTGCCATTGCTTTAGATGCTGGAGCTGAGGATGTAATTGAACCTCCAACTTATGAAGATGACACTGAAGAGGATAGGTATTATAAAATTGTAGGTTCTTCAGAGAACTTTTCATTTATACCATCTAAGCTGCGTGATAATAGTTCTGAGCTTCTTCCAAATACCCTGGTTGTGGTTTGTTTCTAATTTCTATTGGCTACTGTATATGCTATTTCATTTCTTGGATTTTCATTTCTCTTTTCTTCCTTCTCCTTTTGGATTCATATAATACAAATATTGACAAGCAAACAATCCGAAATGTGTAAGTTTAATCTGTGATGTGGCAATATGCAATTTCTTAAATGAGTTTGGGAGTTGCCTTTTCCTGATTCACTGTTCTGTTCTTCTGCCTGTATTGCATTTTTAAAATGTTCCATTTGCAGACAAACTTTTCCTTTTTAGGGAAGCTTTCTTGGAGACTATAAATATTATTTCTAACAGTTGTTTTCCAGATTTACATGTTACAAAATCTCCCCAATTATATTTGGATTTGACTCTTTTAAAGTAAGCCAAGGTAAAGTACGTAATCTCGGTCATCAATGAGAAAATCAACTGTTGATATTTCAACACATGCATGATTTGTTAGGCATCAGCATGTGCACGTAACATGACTGTTGATTTTTTTCATCAATGTTTGAGATTTGTTACTTTACCCTCAAAAGGATAAAGTTAGAATTAATGTCTCATGTGACATGTATGTGACTTATGTAAGGAATAATAAATAAATAAATAATAATTAAAGACTAAATTATAATTGGGTTAGATAAAATAAGTTTCTAAAGGTAACTGCTACTTGATGGAAGTAGTAAAAGGGGTTAATATCCACTAACGTGAAACAAGGTCATCTTCCTGACAAAAAAGTGTTTTCTCTAACCTCTAGTCATCATGAACGTAGAAAGACAGAAAAAATAGTCAAGGAAGCGAAATCTTGTTTTTCTTTTCTTCCAATGAATCAAAGTACACCGGAGAGAAGTCTCACTATCGAAAAAGGTAGATGATGAGGCTATGGACTTGAACAAGGAACTTATGAGCAAACTACTTGAGCTTGATGATGTTGATGCTGTTTATACAGATCAGAAATAGTAATTTTTATATGTTTAAAAGCTGTTCAGCAGACAACTCAAGGTTATTCTTCGACCCTGGGAGTTCCTATCACATTATGTACGGTCTATTTGCAAAATGAAAATAGGCTCTAAAAATTATTGGGGATGCCTCAGGTGAGAAATTTGTAGATCTGACACATGTATACCTACTATTTAATCTGTTTCCTTTTTTTTTTTTTTGAGGGTGGCCAGAGGAATGCTTTCTGGGAAGGGAATTTCATTTTGAAATTATTTGATTCAAAACCGAGGATATTTAAATCATGTATCGTCTTATATGACAAACTACAAAGTCCAATAATAATAAAACAGTAAATCTTGATTCCTTCTGGTTGGGTACGATGATCCCGG
>Glyma04g08920.1 sequence type=CDS gene model=Glyma04g08920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGAATAAAACGACGATGAGAGCAGTGCTTCAGCTTCAGGCTTTGACAGCTCGGCTTTCACTTTCCCCCTCCAACTTCGTTCGCCGCAAAAGCTTATGGTTCGATGCAAATAGGGATAACTCCCAAGTGAGAAGGATATGGCCTTCCACTCCTGTTTGTATGGGTCGCCGTTCCATCAAAATTGCCGGGAGAAAGGGAGCCCAAGATGCAAAGAAAACAAAACTATACTCAAGGATCGGAAAGGAAGTCGTGTCTGCTGTAAAGAGAGGTGGTCCAAATGTAACATCCGATTCAGTTTTGGCTGCTGTACTTGGGAAAGCCAAGGAGCTTGATCTCCCTAAAGATATTGTTGACCGCAATATCAAGAGAGCTAATGAGAAAGGACAAGAGGCTTATATCGAGAAAGCCTACAAGGTTTATGGTTATGGAGGAGTTAGTATGGTAGTTGAGGTATCAACTGATAAGGTACATCGTTCAGTGACAAAGATTAGAGAAGTGATAAGGGACTATGGAGGAAAGATGGCAGATTCTGGATCTGTGACGTTTAAGTTTAAACGTGTTCGGTTAGTAAATATTAAAGCCACTAATGCTGATAAAGATCAGCTGCTTGCCATTGCTTTAGATGCTGGAGCTGAGGATGTAATTGAACCTCCAACTTATGAAGATGACACTGAAGAGGATAGGTCAGAAAGGTATTATAAAATTGTAGGTTCTTCAGAGAACTTTTCATTTATACCATCTAAGCTGCGTGATAATAGTTCTGAGCTTCTTCCAAATACCCTGGTTGTGGTAGATGATGAGGCTATGGACTTGAACAAGGAACTTATGAGCAAACTACTTGAGCTTGATGATGTTGATGCTGTTTATACAGATCAGAAATAG >Glyma04g08920.2 sequence type=CDS gene model=Glyma04g08920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGAATAAAACGACGATGAGAGCAGTGCTTCAGCTTCAGGCTTTGACAGCTCGGCTTTCACTTTCCCCCTCCAACTTCGTTCGCCGCAAAAGCTTATGGTTCGATGCAAATAGGGATAACTCCCAAGTGAGAAGGATATGGCCTTCCACTCCTGTTTGTATGGGTCGCCGTTCCATCAAAATTGCCGGGAGAAAGGGAGCCCAAGATGCAAAGAAAACAAAACTATACTCAAGGATCGGAAAGGAAGTCGTGTCTGCTGTAAAGAGAGGTGGTCCAAATGTAACATCCGATTCAGTTTTGGCTGCTGTACTTGGGAAAGCCAAGGAGCTTGATCTCCCTAAAGATATTGTTGACCGCAATATCAAGAGAGCTAATGAGAAAGGACAAGAGGCTTATATCGAGAAAGCCTACAAGGTTTATGGTTATGGAGGAGTTAGTATGGTAGTTGAGGTATCAACTGATAAGGTACATCGTTCAGTGACAAAGATTAGAGAAGTGATAAGGGACTATGGAGGAAAGATGGCAGATTCTGGATCTGTGACGTTTAAGTTTAAACGTGTTCGGTTAGTAAATATTAAAGCCACTAATGCTGATAAAGATCAGCTGCTTGCCATTGCTTTAGATGCTGGAGCTGAGGATGTAATTGAACCTCCAACTTATGAAGATGACACTGAAGAGGATAGGTCAGAAAGGTATTATAAAATTGTAGGTTCTTCAGAGAACTTTTCATTTATACCATCTAAGCTGCGTGATAATAGTTCTGAGCTTCTTCCAAATACCCTGGTTGTGGTTTGTTTCTAA >Glyma04g08920.3 sequence type=CDS gene model=Glyma04g08920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGAATAAAACGACGATGAGAGCAGTGCTTCAGCTTCAGGCTTTGACAGCTCGGCTTTCACTTTCCCCCTCCAACTTCGTTCGCCGCAAAAGCTTATGGTTCGATGCAAATAGGGATAACTCCCAAGTGAGAAGGATATGGCCTTCCACTCCTGTTTGTATGGGTCGCCGTTCCATCAAAATTGCCGGGAGAAAGGGAGCCCAAGATGCAAAGAAAACAAAACTATACTCAAGGATCGGAAAGGAAGTCGTGTCTGCTGTAAAGAGAGGTGGTCCAAATGTAACATCCGATTCAGTTTTGGCTGCTGTACTTGGGAAAGCCAAGGAGCTTGATCTCCCTAAAGATATTGTTGACCGCAATATCAAGAGAGCTAATGAGAAAGGACAAGAGGCTTATATCGAGAAAGCCTACAAGGTTTATGGTTATGGAGGAGTTAGTATGGTAGTTGAGGTATCAACTGATAAGGTACATCGTTCAGTGACAAAGATTAGAGAAGTGATAAGGGACTATGGAGGAAAGATGGCAGATTCTGGATCTGTGACGTTTAAGTTTAAACGTGTTCGGTTAGTAAATATTAAAGCCACTAATGCTGATAAAGATCAGCTGCTTGCCATTGCTTTAGATGCTGGAGCTGAGGATGTAATTGAACCTCCAACTTATGAAGATGACACTGAAGAGGATAGGTATTATAAAATTGTAGGTTCTTCAGAGAACTTTTCATTTATACCATCTAAGCTGCGTGATAATAGTTCTGAGCTTCTTCCAAATACCCTGGTTGTGGTTTGTTTCTAA
>Glyma04g08920.1 sequence type=predicted peptide gene model=Glyma04g08920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNKTTMRAVLQLQALTARLSLSPSNFVRRKSLWFDANRDNSQVRRIWPSTPVCMGRRSIKIAGRKGAQDAKKTKLYSRIGKEVVSAVKRGGPNVTSDSVLAAVLGKAKELDLPKDIVDRNIKRANEKGQEAYIEKAYKVYGYGGVSMVVEVSTDKVHRSVTKIREVIRDYGGKMADSGSVTFKFKRVRLVNIKATNADKDQLLAIALDAGAEDVIEPPTYEDDTEEDRSERYYKIVGSSENFSFIPSKLRDNSSELLPNTLVVVDDEAMDLNKELMSKLLELDDVDAVYTDQK* >Glyma04g08920.2 sequence type=predicted peptide gene model=Glyma04g08920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNKTTMRAVLQLQALTARLSLSPSNFVRRKSLWFDANRDNSQVRRIWPSTPVCMGRRSIKIAGRKGAQDAKKTKLYSRIGKEVVSAVKRGGPNVTSDSVLAAVLGKAKELDLPKDIVDRNIKRANEKGQEAYIEKAYKVYGYGGVSMVVEVSTDKVHRSVTKIREVIRDYGGKMADSGSVTFKFKRVRLVNIKATNADKDQLLAIALDAGAEDVIEPPTYEDDTEEDRSERYYKIVGSSENFSFIPSKLRDNSSELLPNTLVVVCF* >Glyma04g08920.3 sequence type=predicted peptide gene model=Glyma04g08920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNKTTMRAVLQLQALTARLSLSPSNFVRRKSLWFDANRDNSQVRRIWPSTPVCMGRRSIKIAGRKGAQDAKKTKLYSRIGKEVVSAVKRGGPNVTSDSVLAAVLGKAKELDLPKDIVDRNIKRANEKGQEAYIEKAYKVYGYGGVSMVVEVSTDKVHRSVTKIREVIRDYGGKMADSGSVTFKFKRVRLVNIKATNADKDQLLAIALDAGAEDVIEPPTYEDDTEEDRYYKIVGSSENFSFIPSKLRDNSSELLPNTLVVVCF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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