Glyma04g08910 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g08910

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7056515
stop:	7060783
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32810	AT	Annotation by Michelle Graham. TAIR10: carotenoid cleavage dioxygenase 8 \| chr4:15828348-15831299 FORWARD LENGTH=570	SoyBase	E_val: 0	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009830	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification involved in abscission	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010223	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary shoot formation	SoyBase	N/A	ISS
GO:0016121	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotene catabolic process	SoyBase	N/A	ISS
GO:0016124	GO-bp	Annotation by Michelle Graham. GO Biological Process: xanthophyll catabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0016702	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	SoyBase	N/A	ISS
KOG1285	KOG	Beta, beta-carotene 15,15'-dioxygenase and related enzymes	JGI		ISS
PTHR10543	Panther	CARTENOID OXYGENASE	JGI		ISS
PTHR10543:SF6	Panther	BETA-CAROTENE DIOXYGENASE	JGI		ISS
PF03055	PFAM	Retinal pigment epithelial membrane protein	JGI		ISS
UniRef100_E2GK55	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Carotenoid cleavage dioxygenase 8 n=1 Tax=Glycine max RepID=E2GK55_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JUV6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUV6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08910

Paralog	Evidence	Comments
Glyma06g09000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g084100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08910

Limit To All Plant Sequences

>Glyma04g08910.1   sequence type=CDS   gene model=Glyma04g08910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCACCACCTTGCCTTCAATCAGAAACTCCATTTCATGCCCAACTATGCTTGTTCCTGACATGCCTCATAACAATATTTCTCTTCGAAATAAAGGCTTCATCTACAAAGGGCAACACGGTATTAATCTCCGAGACTTCACCAAGGCAAATGTTGCAAGTCCATCATTACCTGTGATTGCCCCACCAACACCGGAGGAACGGAAAGAAACCACCGCCGACGACCGCCATCACCACCACCACCACGTTGCATGGACTAGTATCCCGCAAGAGAGGTGGGAAGGAGAGTTACAAGTTCAAGGAAAAATTCCATTATGGCTGAAAGGAACGTACCTAAGGAATGGTCCGGGCATGTGGCACATAGAGGACTACAACTTCCGGCACCTCTTCGATGGTTACGCCACGCTGGTGAGGCTCGGTTTCCAGAACGGGCGGTTAGTCGCCGGGCACCGGCAGATTGAGTCGGAGGCGTACCGGGCGGCGAAGAAGAACAAGAAAATATGTTACCGAGAGTTCTCCGAGGTGCCTAAGGCGGCGAATTTCCTGGCCTACGTGGGGGAGCTGGCGAGCCTGTTCTCCGGCGCGTCGTTGACCGACAACGCGAACACCGGCGTGGTGAAGCTCGGTGACGGCAGGGTGGTTTGCCTGACGGAGACTCAGAAAGGGTCCATAGTGATAAACCCTGAGACGCTGGAGACAGTGGGGAAGTTTGAGTACAGTGACTCATTGGGGGGTCTTATTCACTCTGCACACCCCATTGTGACGGATAACGAGTTTTTGACGTTGTTGCCTGATTTGGTGAGAGCAGGGTACCTTGTGGTGAGGATGGAGCCTGGCACCAATGAGAGAAGGGTCATTGGAAGGGTCAACTGTAGGGGTGGTCCTGCACCTGGTTGGGTCCATTCTTTTCCTGTTACTGAACACTATGTTATTGTGCCTGAAATGCCGTTGAGGTATTGTGCTCAGAATTTGCTCAAGGCTGAGCCTACTCCCTTGTACAAGTTTGAGTGGCACCCTGAGTCCAAAGCTTTTATGCATGCCATGTGCAAGACTAGTGGGAAAATTGTGGCAAGTGTGGAAGTGCCTCTGTTTGTTACTTTCCATTTCATAAATGCGTATGAGGAGCAAGATGAAGATGGGAGGGTGACGGCGATTATTGCCGACTGTTGTGAGCATAATTCCGATACTACCATTCTTGATAGGCTTAGGTTACAGAACCTTCGTTCATTTAATGGTGAAGATGTTCTACCTGATGCTAGGGTTGGTCGGTTCAGAATACCACTGGATGGAAGTCCATATGGAACACTAGAGGCAGCATTGGAGCCAAATGAACATGGGAGAGGCATGGACATGTGCAGCATAAACCCTAATTATTTAGGGAAGAAATATAGATACGCATATGCTTGTGGAGCACAGCGACCTTGTAACTTTCCCAACACCCTCACCAAGCTTGATTTTGAATTGAAGAAGGCTAAGAACTGGCATGAAGAAGGTGCTGTGCCCTCAGAACCCTTCTTTGTGGCACGACCAGGAGCAACAGAGGAAGATGATGGCGTGGTAATCTCAATTGTCAGTGAGAAAAATGGAGAAGGATATGCGTTGCTGTTAGATGGTTCCACCTTTGAAGAGATTGCTAGGGCCAAATTCCCCTATGGACTTCCATATGGGTTGCATGGATGCTGGGTTCCAAAAGAGTAG

Predicted protein sequences of Glyma04g08910

Limit To All Plant Sequences

>Glyma04g08910.1   sequence type=predicted peptide   gene model=Glyma04g08910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFTTLPSIRNSISCPTMLVPDMPHNNISLRNKGFIYKGQHGINLRDFTKANVASPSLPVIAPPTPEERKETTADDRHHHHHHVAWTSIPQERWEGELQVQGKIPLWLKGTYLRNGPGMWHIEDYNFRHLFDGYATLVRLGFQNGRLVAGHRQIESEAYRAAKKNKKICYREFSEVPKAANFLAYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVINPETLETVGKFEYSDSLGGLIHSAHPIVTDNEFLTLLPDLVRAGYLVVRMEPGTNERRVIGRVNCRGGPAPGWVHSFPVTEHYVIVPEMPLRYCAQNLLKAEPTPLYKFEWHPESKAFMHAMCKTSGKIVASVEVPLFVTFHFINAYEEQDEDGRVTAIIADCCEHNSDTTILDRLRLQNLRSFNGEDVLPDARVGRFRIPLDGSPYGTLEAALEPNEHGRGMDMCSINPNYLGKKYRYAYACGAQRPCNFPNTLTKLDFELKKAKNWHEEGAVPSEPFFVARPGATEEDDGVVISIVSEKNGEGYALLLDGSTFEEIARAKFPYGLPYGLHGCWVPKE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain