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Report for Sequence Feature Glyma04g08881

Feature Type:gene_model
Chromosome:Gm04
Start:6984311
stop:6987928
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08881
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G25820AT Annotation by Michelle Graham. TAIR10: Exostosin family protein | chr5:8997248-8999574 REVERSE LENGTH=654 SoyBaseE_val: 0ISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
KOG1021 KOG Acetylglucosaminyltransferase EXT1/exostosin 1 JGI ISS
PTHR11062Panther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED JGI ISS
PTHR11062:SF37Panther SUBFAMILY NOT NAMED JGI ISS
PF03016PFAM Exostosin family JGI ISS
UniRef100_B9RRY1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RRY1_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002339DC4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339DC4 related cluster n=1 Tax=unknown RepID=UPI0002339DC4 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g08881
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g08881 not represented in the dataset
Glyma04g08881 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08881
ParalogEvidenceComments
Glyma06g08960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08881 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g083800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g08881
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g08881
>Glyma04g08881.2   sequence type=transcript   gene model=Glyma04g08881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTACCGGTAATTTCACTTCACAGTTAAAATTTAGATTTTTAGTGTCTCGGACTTGTTCTCGTACTGGTTCCTTAATTTACTCGAGTCTTCCATTCCTGTTTCTTCTTTCCTTCTTTCCTGTGATCTGTTAGATCCTTTCCCTGTTCGTAATATACATACAAAAGGGACAGTCACAGACGCAAATCCCATTACCTACGCATGCCCTTTGTCGGTCCGTTAGTCCAACGATTACGTTACACATTACTCCAATGTTTCTCTGACCAAATGATTCTCTCATTGTGCTTCCTCATCATAAGATTCTCTCTTTCATCTCCCCATTGAAAACCCTCGCCAAAGTTATTGACTTTTCTGGTTCAACCGCAATGGGTTTGCTTCAATTTCTTCTTCTGATCTCTCTAGGGGTGAGGAGTTAGCCAGTTTTTTATTCTTTTTCTGAGATTCCCACATGGATCGGGGGTTTAGATTTCTGTGTCAGGCAGAAACTACGAGATTAGTTTCATTTGTAGGAATAACAGTGGCTATAGTTTTCATGGTTCAGTATTCTGAACTTCCTAGTAGTAAATTCTTATCTTCTGTTACTACCAAGTTTACTAGTTTCACAATGGATACATCATCTTCAGTTAATTCTAAAGTGGAGGGTAATAATTTGCACCTAAATGGTTCAAATTCAAACTCTACTCATGCATTGGAAGAGACAGCAATTAGTCCTCAGCCAGAAATGATGGTTCCCCGGTGAGTAGTGTTCAGGGAAGAGAAATTAATTTGACATCACAAGGGGCTTCATCACCACAGCCTATGGTGCCATTGCCCAACAGAACATCCTTAGATTCAGAAACGGATTCAAGAAGTCCTGTGGTATCTGTCACTTCAGCTGCAACTTCAGTGAAATCGAATACTGATCCAGTTTATAAGGATGGAAACTCAGGTTCTTTGCCAGGTAATAGTAACTTGACATCCAATAATGTCAAGCCTGTGACTGCAAAGAATTCCAAAAAGAGGCCATCTAAAGTAGTTTCAATATCTGAGATGAACTTGCTGTTGCAGCATAATCATGCTTCTTCCAAGCTAGCGAAACCAGCAAGGGCTTCAGCTGTTGATCTGGAAATATTGCATGCACAATCAGAGATTTTAAATGCACCCCTCATTATGAATGATCCAAGGCTTTACCCTCCTTTATACAGGAATGTCTCCATGTTCAGAAGGAGTTATGAACTAATGGAAAATATGCTCAAAGTTTACATCTACCAGGATGGGGATAGACCAATCTTTCATGAGCCCTTACTGGATGGAATATATGCATCTGAAGGATGGTTCATGAAATTAATGGAGGCAAACAAACAGTTTGTCACTAGAGACCCTGGGAAGGCTCACTTGTTTTACATACCTTTCAGTTCAAGATTGTTGCAGCAAACTCTCTATGTACGTAATTCACACAGACGTTCCAACTTAATTGAGTACATGAAAAATTATGTGGACATGATTGCTGGAAAGTATCCTTTCTGGAATAGAACTTCTGGAGCAGATCACTTTGTTGTTGCGTGCCATGATTGGGCTCCTGCAGAAACAAGAGGGCGCATGCTTAGTTGCATCAGAGCCCTCTGCAATGCTGACATTGAAGTAGGATTCAAGATAGGCAAGGATGTTTCTCTTCCAGAAACATACATAAGGTCAAGTGAGAATCCTGTAAAAAATATAGGGGGTGATCCTCCTTCTAAGAGGCCTATCCTGGCTTTTTTCGCAGGAGGTTTACACGGTTATGTTCGGCCTATTCTGTTGAAGCACTGGGAGAACAAAGAACCTGACATGAAGATATCTGGTCCCTTGCCACATGTCAGGGGTAATGTAAACTACATCCAGCTCATGAAGAGCAGCAAATTCTGCATCTGTGCACGAGGTCATGAAGTTAATAGCCCGCGTGTGGTAGAGGCAATATTCCACGAGTGCATTCCAGTCATCATATCTGACAATTTTATTCCTCCTTTCTTTGAGATTCTGAACTGGGAATCTTTTGCTGTGTTTGTCAAGGAGGAAGAAATCCCTAATTTGAGGAACATACTGCTGTCCATCTCAGAAGAAAGATACTTAGAGATGCATAAGAGGGCGAAAAAGGTGCAAGAGCATTTTCTCTGGCATGCTGAACCTGTAAAGTATGATTTGTTTCATATGCTTCTTCATTCAATTTGGTACAATAGACTTTTCCATATAAGCCGGACATGACGATATGAATTTTGGAGACAAGTCACTGTGATTGATAGCTTGATGATGTATAGATTGTTTGAGTTAACAAATGAAGCAAGAACAATATGGTTAGAGAAAAAGTTCATTGATTCTAGAGAAAATGTTATTGTTTGATTCATATCCCTAGAGAATAATTGATTCATAATAATGTTAGTGTTTGATCATCTAGTGAAATCATG
Coding sequences of Glyma04g08881
>Glyma04g08881.1   sequence type=CDS   gene model=Glyma04g08881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGGGGGTTTAGATTTCTGTGTCAGGCAGAAACTACGAGATTAGTTTCATTTGTAGGAATAACAGTGGCTATAGTTTTCATGGTTCAGTATTCTGAACTTCCTAGTAGTAAATTCTTATCTTCTGTTACTACCAAGTTTACTAGTTTCACAATGGATACATCATCTTCAGTTAATTCTAAAGTGGAGGGTAATAATTTGCACCTAAATGGTTCAAATTCAAACTCTACTCATGCATTGGAAGAGACAGCAATTAGTCCTCAGGTACCTCTCTTTCACAATGGCAGTGATTCAATTACTTCCCCTGCAGCAGATACATCTAAAGATCTTGATAGTGTTGTCAATTTCACAGCCAGAAATGATGGTTCCCCGGTGAGTAGTGTTCAGGGAAGAGAAATTAATTTGACATCACAAGGGGCTTCATCACCACAGCCTATGGTGCCATTGCCCAACAGAACATCCTTAGATTCAGAAACGGATTCAAGAAGTCCTGTGGTATCTGTCACTTCAGCTGCAACTTCAGTGAAATCGAATACTGATCCAGTTTATAAGGATGGAAACTCAGGTTCTTTGCCAGGTAATAGTAACTTGACATCCAATAATGTCAAGCCTGTGACTGCAAAGAATTCCAAAAAGAGGCCATCTAAAGTAGTTTCAATATCTGAGATGAACTTGCTGTTGCAGCATAATCATGCTTCTTCCAAGCTAGCGAAACCAGCAAGGGCTTCAGCTGTTGATCTGGAAATATTGCATGCACAATCAGAGATTTTAAATGCACCCCTCATTATGAATGATCCAAGGCTTTACCCTCCTTTATACAGGAATGTCTCCATGTTCAGAAGGAGTTATGAACTAATGGAAAATATGCTCAAAGTTTACATCTACCAGGATGGGGATAGACCAATCTTTCATGAGCCCTTACTGGATGGAATATATGCATCTGAAGGATGGTTCATGAAATTAATGGAGGCAAACAAACAGTTTGTCACTAGAGACCCTGGGAAGGCTCACTTGTTTTACATACCTTTCAGTTCAAGATTGTTGCAGCAAACTCTCTATGTACGTAATTCACACAGACGTTCCAACTTAATTGAGTACATGAAAAATTATGTGGACATGATTGCTGGAAAGTATCCTTTCTGGAATAGAACTTCTGGAGCAGATCACTTTGTTGTTGCGTGCCATGATTGGGCTCCTGCAGAAACAAGAGGGCGCATGCTTAGTTGCATCAGAGCCCTCTGCAATGCTGACATTGAAGTAGGATTCAAGATAGGCAAGGATGTTTCTCTTCCAGAAACATACATAAGGTCAAGTGAGAATCCTGTAAAAAATATAGGGGGTGATCCTCCTTCTAAGAGGCCTATCCTGGCTTTTTTCGCAGGAGGTTTACACGGTTATGTTCGGCCTATTCTGTTGAAGCACTGGGAGAACAAAGAACCTGACATGAAGATATCTGGTCCCTTGCCACATGTCAGGGGTAATGTAAACTACATCCAGCTCATGAAGAGCAGCAAATTCTGCATCTGTGCACGAGGTCATGAAGTTAATAGCCCGCGTGTGGTAGAGGCAATATTCCACGAGTGCATTCCAGTCATCATATCTGACAATTTTATTCCTCCTTTCTTTGAGATTCTGAACTGGGAATCTTTTGCTGTGTTTGTCAAGGAGGAAGAAATCCCTAATTTGAGGAACATACTGCTGTCCATCTCAGAAGAAAGATACTTAGAGATGCATAAGAGGGCGAAAAAGGTGCAAGAGCATTTTCTCTGGCATGCTGAACCTGTAAAGTATGATTTGTTTCATATGCTTCTTCATTCAATTTGGTACAATAGACTTTTCCATATAAGCCGGACATGA

>Glyma04g08881.2   sequence type=CDS   gene model=Glyma04g08881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCCATTGCCCAACAGAACATCCTTAGATTCAGAAACGGATTCAAGAAGTCCTGTGGTATCTGTCACTTCAGCTGCAACTTCAGTGAAATCGAATACTGATCCAGTTTATAAGGATGGAAACTCAGGTTCTTTGCCAGGTAATAGTAACTTGACATCCAATAATGTCAAGCCTGTGACTGCAAAGAATTCCAAAAAGAGGCCATCTAAAGTAGTTTCAATATCTGAGATGAACTTGCTGTTGCAGCATAATCATGCTTCTTCCAAGCTAGCGAAACCAGCAAGGGCTTCAGCTGTTGATCTGGAAATATTGCATGCACAATCAGAGATTTTAAATGCACCCCTCATTATGAATGATCCAAGGCTTTACCCTCCTTTATACAGGAATGTCTCCATGTTCAGAAGGAGTTATGAACTAATGGAAAATATGCTCAAAGTTTACATCTACCAGGATGGGGATAGACCAATCTTTCATGAGCCCTTACTGGATGGAATATATGCATCTGAAGGATGGTTCATGAAATTAATGGAGGCAAACAAACAGTTTGTCACTAGAGACCCTGGGAAGGCTCACTTGTTTTACATACCTTTCAGTTCAAGATTGTTGCAGCAAACTCTCTATGTACGTAATTCACACAGACGTTCCAACTTAATTGAGTACATGAAAAATTATGTGGACATGATTGCTGGAAAGTATCCTTTCTGGAATAGAACTTCTGGAGCAGATCACTTTGTTGTTGCGTGCCATGATTGGGCTCCTGCAGAAACAAGAGGGCGCATGCTTAGTTGCATCAGAGCCCTCTGCAATGCTGACATTGAAGTAGGATTCAAGATAGGCAAGGATGTTTCTCTTCCAGAAACATACATAAGGTCAAGTGAGAATCCTGTAAAAAATATAGGGGGTGATCCTCCTTCTAAGAGGCCTATCCTGGCTTTTTTCGCAGGAGGTTTACACGGTTATGTTCGGCCTATTCTGTTGAAGCACTGGGAGAACAAAGAACCTGACATGAAGATATCTGGTCCCTTGCCACATGTCAGGGGTAATGTAAACTACATCCAGCTCATGAAGAGCAGCAAATTCTGCATCTGTGCACGAGGTCATGAAGTTAATAGCCCGCGTGTGGTAGAGGCAATATTCCACGAGTGCATTCCAGTCATCATATCTGACAATTTTATTCCTCCTTTCTTTGAGATTCTGAACTGGGAATCTTTTGCTGTGTTTGTCAAGGAGGAAGAAATCCCTAATTTGAGGAACATACTGCTGTCCATCTCAGAAGAAAGATACTTAGAGATGCATAAGAGGGCGAAAAAGGTGCAAGAGCATTTTCTCTGGCATGCTGAACCTGTAAAGTATGATTTGTTTCATATGCTTCTTCATTCAATTTGGTACAATAGACTTTTCCATATAAGCCGGACATGA
Predicted protein sequences of Glyma04g08881
>Glyma04g08881.1   sequence type=predicted peptide   gene model=Glyma04g08881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRGFRFLCQAETTRLVSFVGITVAIVFMVQYSELPSSKFLSSVTTKFTSFTMDTSSSVNSKVEGNNLHLNGSNSNSTHALEETAISPQVPLFHNGSDSITSPAADTSKDLDSVVNFTARNDGSPVSSVQGREINLTSQGASSPQPMVPLPNRTSLDSETDSRSPVVSVTSAATSVKSNTDPVYKDGNSGSLPGNSNLTSNNVKPVTAKNSKKRPSKVVSISEMNLLLQHNHASSKLAKPARASAVDLEILHAQSEILNAPLIMNDPRLYPPLYRNVSMFRRSYELMENMLKVYIYQDGDRPIFHEPLLDGIYASEGWFMKLMEANKQFVTRDPGKAHLFYIPFSSRLLQQTLYVRNSHRRSNLIEYMKNYVDMIAGKYPFWNRTSGADHFVVACHDWAPAETRGRMLSCIRALCNADIEVGFKIGKDVSLPETYIRSSENPVKNIGGDPPSKRPILAFFAGGLHGYVRPILLKHWENKEPDMKISGPLPHVRGNVNYIQLMKSSKFCICARGHEVNSPRVVEAIFHECIPVIISDNFIPPFFEILNWESFAVFVKEEEIPNLRNILLSISEERYLEMHKRAKKVQEHFLWHAEPVKYDLFHMLLHSIWYNRLFHISRT*

>Glyma04g08881.2   sequence type=predicted peptide   gene model=Glyma04g08881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPLPNRTSLDSETDSRSPVVSVTSAATSVKSNTDPVYKDGNSGSLPGNSNLTSNNVKPVTAKNSKKRPSKVVSISEMNLLLQHNHASSKLAKPARASAVDLEILHAQSEILNAPLIMNDPRLYPPLYRNVSMFRRSYELMENMLKVYIYQDGDRPIFHEPLLDGIYASEGWFMKLMEANKQFVTRDPGKAHLFYIPFSSRLLQQTLYVRNSHRRSNLIEYMKNYVDMIAGKYPFWNRTSGADHFVVACHDWAPAETRGRMLSCIRALCNADIEVGFKIGKDVSLPETYIRSSENPVKNIGGDPPSKRPILAFFAGGLHGYVRPILLKHWENKEPDMKISGPLPHVRGNVNYIQLMKSSKFCICARGHEVNSPRVVEAIFHECIPVIISDNFIPPFFEILNWESFAVFVKEEEIPNLRNILLSISEERYLEMHKRAKKVQEHFLWHAEPVKYDLFHMLLHSIWYNRLFHISRT*






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