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Report for Sequence Feature Glyma04g08870

Feature Type:gene_model
Chromosome:Gm04
Start:6979042
stop:6980040
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32790AT Annotation by Michelle Graham. TAIR10: Exostosin family protein | chr4:15812566-15814908 FORWARD LENGTH=593 SoyBaseE_val: 8.00E-129ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
PTHR11062Panther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED JGI ISS
PTHR11062:SF37Panther SUBFAMILY NOT NAMED JGI ISS
PF03016PFAM Exostosin family JGI ISS
UniRef100_G7IB43UniRef Annotation by Michelle Graham. Most informative UniRef hit: Exostosin-2 n=1 Tax=Medicago truncatula RepID=G7IB43_MEDTR SoyBaseE_val: 2.00E-142ISS
UniRef100_I1JUV2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUV2_SOYBN SoyBaseE_val: 2.00E-178ISS

Expression Patterns of Glyma04g08870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g08870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g08870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g08870
>Glyma04g08870.1   sequence type=CDS   gene model=Glyma04g08870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGAACTCTTAAAGTGTATGTGTATAGAGAAGGAGACAAACCCATAATGCATTCACCATATCTTTTGGGAATTTATGCTTCGGAGGGATGGTTCATGAGGCTGATGGAAGCTAGTAAACAATTTGTGACTAAAGACCCAAAGAAAGCCCAGCTATGTTACTTACCTTTCAGTTCTCGGAGGCTAGAGGAAACTTTGTATGTACCGAATTCACATAGTTCTAGGAACCTGATTCAGTATCTGAAAAATTATGTAGACATGATTGCTGGGAAACATCGTTTCTGGAACAGAACAGGAGGTGCTGATCATTTTCTTGTTGCTTGCCATGATGGGGCCCCTACAGAAACACGGCAACACATGGCTAGGTGCTTAAGAGCCCTATGCAATGCTGATGTGAAAGAAGGTTTTGTCTTGGGAAAGGACGTTTCTCTTCCTGAAACTTATGTCCGCAATGCTCCGAAGCCCACTAGAAATGTTGGCGGAAACCGAGTTTCAAAGAGGAAAACTCTGGCGTTTTTCGCAGGAGGAATGCATGGTTATGTTAGGCCAATTCTGTTGCAGCACTGGGAAAATAAAAACCCTGCCATGAAAATCTTCGGGAGACTGCCAAAGTCTAAGGGCAACAGGAACTACATCCAGTACATGAAGAGCAGCAAGTACTGTATTTGTGCAAAGGGATACGAAGTCAATAGCCCAAGAGTTGTGGAGGCTATCTTCCATGAATGTGCGATACATCCTCTACCCCTCACAAATAACGAATAA
Predicted protein sequences of Glyma04g08870
>Glyma04g08870.1   sequence type=predicted peptide   gene model=Glyma04g08870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERTLKVYVYREGDKPIMHSPYLLGIYASEGWFMRLMEASKQFVTKDPKKAQLCYLPFSSRRLEETLYVPNSHSSRNLIQYLKNYVDMIAGKHRFWNRTGGADHFLVACHDGAPTETRQHMARCLRALCNADVKEGFVLGKDVSLPETYVRNAPKPTRNVGGNRVSKRKTLAFFAGGMHGYVRPILLQHWENKNPAMKIFGRLPKSKGNRNYIQYMKSSKYCICAKGYEVNSPRVVEAIFHECAIHPLPLTNNE*






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