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Report for Sequence Feature Glyma04g08862

Feature Type:gene_model
Chromosome:Gm04
Start:6972124
stop:6975763
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08862
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63520AT Annotation by Michelle Graham. TAIR10: carotenoid cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD LENGTH=538 SoyBaseE_val: 1.00E-32ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0006655GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0010304GO-bp Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0016117GO-bp Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process SoyBaseN/AISS
GO:0016118GO-bp Annotation by Michelle Graham. GO Biological Process: carotenoid catabolic process SoyBaseN/AISS
GO:0016121GO-bp Annotation by Michelle Graham. GO Biological Process: carotene catabolic process SoyBaseN/AISS
GO:0016124GO-bp Annotation by Michelle Graham. GO Biological Process: xanthophyll catabolic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0044242GO-bp Annotation by Michelle Graham. GO Biological Process: cellular lipid catabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0045549GO-mf Annotation by Michelle Graham. GO Molecular Function: 9-cis-epoxycarotenoid dioxygenase activity SoyBaseN/AISS
PTHR10543Panther CARTENOID OXYGENASE JGI ISS
PTHR10543:SF1Panther 9-CIS-EPOXYCAROTENOID DIOXYGENASE-RELATED JGI ISS
PF03055PFAM Retinal pigment epithelial membrane protein JGI ISS
UniRef100_B9RRX7UniRef Annotation by Michelle Graham. Most informative UniRef hit: 9-cis-epoxycarotenoid dioxygenase, putative n=1 Tax=Ricinus communis RepID=B9RRX7_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002339DC3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339DC3 related cluster n=1 Tax=unknown RepID=UPI0002339DC3 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g08862
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g08862 not represented in the dataset
Glyma04g08862 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g08862 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g083600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g08862
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g08862
>Glyma04g08862.1   sequence type=CDS   gene model=Glyma04g08862   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACAAAACCATGGCAAACACTGCAGCTATATTACTTGACGCTTTTGTAGATTCATTCTTTGAATTTCTTGACCAACCACTGCTTCCATCTCAGAGTAACTTTGCTCCAGTGGTGGAGTTAGGTGAAGCTATAGTCGTGACAAGCATCCAAGGACAAATTCCAGATGATTTTCCCGAGGGTGTCTATATTATAAACGATAAGTCTTCTTGCTGCATATCCTATCTTTGGAGGTCAACTCACATTTGGGTGGAAGGAGAGGGAATGCTTCACGCAATTTATTTTAAAAGGTCGAGTCAAGGGATTTGGACTGTTGAAAAGCAACGAAGCAAACCATTGTTTCTTCCGGCCATAGAAGGCGATTCACCAGCCATTTTGTCTGCTTATCTGTTAAATTGGTACATCAGCAACACCATTGTCTTTGAGCATTCAGGGAAGTTTTATTCAGTCGCTGAAAATCACTTTCCACAAGAGATTAACATCTTTACTCTGAAAACTTTAAGAAATTGGAATAAGGCTCCAGGTACAGGAGAACTAGTTACATTAGGGGTTGCAGCAACCAAACCTTTCGCCATAATTGGAATTATTTCTGCTGAAGGCAAGAAATTGGTTCACAAAGTTGACCTCAACCTAAACAGGTGCACTCTTTGCCATGACATAGGTGTTACACCGAGGTACAACGTGATAATGGATTTTCCATTAACCATTGATCTAAACAGACTTCTTAGAAGAGGCCCATTAATAAAGTATAATAAGGAGGAATATGCAAGGATTGGAGTAATGCCACGCTATGGTGATGCCAACTCAATCAAATGGTTTGAGGTGGAACCTAATTGCACTTTTCACATGATCAATTCTTTTGAGGATGGTCACGAGGCAAGTTACCTGGAAGTTGTAGTGAGGGGCTGCAGATCTCTTGATTCATTAATTCCTGGACCTGACCCGAGTTTGAACGAATTTGAGTGGTTATCTCGTTGTCACGAGTGGCAATTGAATATGCAAACGGGAGAAGTTAAGGAGAGAGGTCTCTGTGGAGCCAACATAGTTTATATGGATTTTCCTATGATGAATGGAAACTTCATAGGTATTCGGAATAGATATGCATACAATAATCAAGTAGTTGATCCCATCGCAAGCTCTAAGCAAGAAGAATACATTTTGCAGTGGGGCTGCCTTTGTCCCCAGAGACGGGGTCTTGAAGAACATGACGGATGGATCATAGCTTTTGTTCACAATGAAGATACAAACATATCTGAAAAATTTTCTGGTGAAACAGTTGCCAAAATTACAATGCCTCGAAGAGTACCATATGGATTTCACGGAACCTTCATGCCAATTTCATTTGAGACACAGTAG
Predicted protein sequences of Glyma04g08862
>Glyma04g08862.1   sequence type=predicted peptide   gene model=Glyma04g08862   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
HKTMANTAAILLDAFVDSFFEFLDQPLLPSQSNFAPVVELGEAIVVTSIQGQIPDDFPEGVYIINDKSSCCISYLWRSTHIWVEGEGMLHAIYFKRSSQGIWTVEKQRSKPLFLPAIEGDSPAILSAYLLNWYISNTIVFEHSGKFYSVAENHFPQEINIFTLKTLRNWNKAPGTGELVTLGVAATKPFAIIGIISAEGKKLVHKVDLNLNRCTLCHDIGVTPRYNVIMDFPLTIDLNRLLRRGPLIKYNKEEYARIGVMPRYGDANSIKWFEVEPNCTFHMINSFEDGHEASYLEVVVRGCRSLDSLIPGPDPSLNEFEWLSRCHEWQLNMQTGEVKERGLCGANIVYMDFPMMNGNFIGIRNRYAYNNQVVDPIASSKQEEYILQWGCLCPQRRGLEEHDGWIIAFVHNEDTNISEKFSGETVAKITMPRRVPYGFHGTFMPISFETQ*






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