Glyma04g08862 - SoyBase

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Report for Sequence Feature Glyma04g08862

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6972124
stop:	6975763
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08862

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63520	AT	Annotation by Michelle Graham. TAIR10: carotenoid cleavage dioxygenase 1 \| chr3:23452940-23455896 FORWARD LENGTH=538	SoyBase	E_val: 1.00E-32	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006636	GO-bp	Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0010304	GO-bp	Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0016118	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid catabolic process	SoyBase	N/A	ISS
GO:0016121	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotene catabolic process	SoyBase	N/A	ISS
GO:0016124	GO-bp	Annotation by Michelle Graham. GO Biological Process: xanthophyll catabolic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0044242	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular lipid catabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0045549	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 9-cis-epoxycarotenoid dioxygenase activity	SoyBase	N/A	ISS
PTHR10543	Panther	CARTENOID OXYGENASE	JGI		ISS
PTHR10543:SF1	Panther	9-CIS-EPOXYCAROTENOID DIOXYGENASE-RELATED	JGI		ISS
PF03055	PFAM	Retinal pigment epithelial membrane protein	JGI		ISS
UniRef100_B9RRX7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 9-cis-epoxycarotenoid dioxygenase, putative n=1 Tax=Ricinus communis RepID=B9RRX7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339DC3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339DC3 related cluster n=1 Tax=unknown RepID=UPI0002339DC3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08862

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g08862 not represented in the dataset	Glyma04g08862 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g08862 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g083600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08862

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08862

Limit To All Plant Sequences

>Glyma04g08862.1   sequence type=CDS   gene model=Glyma04g08862   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACAAAACCATGGCAAACACTGCAGCTATATTACTTGACGCTTTTGTAGATTCATTCTTTGAATTTCTTGACCAACCACTGCTTCCATCTCAGAGTAACTTTGCTCCAGTGGTGGAGTTAGGTGAAGCTATAGTCGTGACAAGCATCCAAGGACAAATTCCAGATGATTTTCCCGAGGGTGTCTATATTATAAACGATAAGTCTTCTTGCTGCATATCCTATCTTTGGAGGTCAACTCACATTTGGGTGGAAGGAGAGGGAATGCTTCACGCAATTTATTTTAAAAGGTCGAGTCAAGGGATTTGGACTGTTGAAAAGCAACGAAGCAAACCATTGTTTCTTCCGGCCATAGAAGGCGATTCACCAGCCATTTTGTCTGCTTATCTGTTAAATTGGTACATCAGCAACACCATTGTCTTTGAGCATTCAGGGAAGTTTTATTCAGTCGCTGAAAATCACTTTCCACAAGAGATTAACATCTTTACTCTGAAAACTTTAAGAAATTGGAATAAGGCTCCAGGTACAGGAGAACTAGTTACATTAGGGGTTGCAGCAACCAAACCTTTCGCCATAATTGGAATTATTTCTGCTGAAGGCAAGAAATTGGTTCACAAAGTTGACCTCAACCTAAACAGGTGCACTCTTTGCCATGACATAGGTGTTACACCGAGGTACAACGTGATAATGGATTTTCCATTAACCATTGATCTAAACAGACTTCTTAGAAGAGGCCCATTAATAAAGTATAATAAGGAGGAATATGCAAGGATTGGAGTAATGCCACGCTATGGTGATGCCAACTCAATCAAATGGTTTGAGGTGGAACCTAATTGCACTTTTCACATGATCAATTCTTTTGAGGATGGTCACGAGGCAAGTTACCTGGAAGTTGTAGTGAGGGGCTGCAGATCTCTTGATTCATTAATTCCTGGACCTGACCCGAGTTTGAACGAATTTGAGTGGTTATCTCGTTGTCACGAGTGGCAATTGAATATGCAAACGGGAGAAGTTAAGGAGAGAGGTCTCTGTGGAGCCAACATAGTTTATATGGATTTTCCTATGATGAATGGAAACTTCATAGGTATTCGGAATAGATATGCATACAATAATCAAGTAGTTGATCCCATCGCAAGCTCTAAGCAAGAAGAATACATTTTGCAGTGGGGCTGCCTTTGTCCCCAGAGACGGGGTCTTGAAGAACATGACGGATGGATCATAGCTTTTGTTCACAATGAAGATACAAACATATCTGAAAAATTTTCTGGTGAAACAGTTGCCAAAATTACAATGCCTCGAAGAGTACCATATGGATTTCACGGAACCTTCATGCCAATTTCATTTGAGACACAGTAG

Predicted protein sequences of Glyma04g08862

Limit To All Plant Sequences

>Glyma04g08862.1   sequence type=predicted peptide   gene model=Glyma04g08862   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
HKTMANTAAILLDAFVDSFFEFLDQPLLPSQSNFAPVVELGEAIVVTSIQGQIPDDFPEGVYIINDKSSCCISYLWRSTHIWVEGEGMLHAIYFKRSSQGIWTVEKQRSKPLFLPAIEGDSPAILSAYLLNWYISNTIVFEHSGKFYSVAENHFPQEINIFTLKTLRNWNKAPGTGELVTLGVAATKPFAIIGIISAEGKKLVHKVDLNLNRCTLCHDIGVTPRYNVIMDFPLTIDLNRLLRRGPLIKYNKEEYARIGVMPRYGDANSIKWFEVEPNCTFHMINSFEDGHEASYLEVVVRGCRSLDSLIPGPDPSLNEFEWLSRCHEWQLNMQTGEVKERGLCGANIVYMDFPMMNGNFIGIRNRYAYNNQVVDPIASSKQEEYILQWGCLCPQRRGLEEHDGWIIAFVHNEDTNISEKFSGETVAKITMPRRVPYGFHGTFMPISFETQ*

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