Glyma04g08840 - SoyBase

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Report for Sequence Feature Glyma04g08840

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6953947
stop:	6955452
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26490	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr2:11268035-11269432 FORWARD LENGTH=465	SoyBase	E_val: 5.00E-78	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0294	KOG	WD40 repeat-containing protein	JGI		ISS
PTHR22844	Panther	F-BOX AND WD40 DOMAIN PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9RS19	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box and wd40 domain protein, putative n=1 Tax=Ricinus communis RepID=B9RS19_RICCO	SoyBase	E_val: 4.00E-107	ISS
UniRef100_UPI0002339C71	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339C71 related cluster n=1 Tax=unknown RepID=UPI0002339C71	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08840

Paralog	Evidence	Comments
Glyma06g08920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g083300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08840

Limit To All Plant Sequences

>Glyma04g08840.2   sequence type=CDS   gene model=Glyma04g08840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCTATGGCAAGAGAACCCTCCTCAGCCTAATGGACACCGAAAAGCCAGAACAACCGCCACAATCCCCCGTCCACCTTCGCGTCCAAACCCACAGAGAGATTAGCGAACAAGACGTTCAGTTCAGTCCTCCAAGGCCTTCAAGCACTACTACTTCCGATGGCATGTTCCCTATGATGATGCCAGATTCACCATGGACACTTTCCCCTCTCCCAACCCCTTCACCTTCTCTTCTTTATCACTGCATCGCTTCGCTCCACCGCCACGAAGGTAACATCTACGCAATTGCAGCTTCAAAGGGTTTAGTCTTTACCGGCTCAAATAGTAGTAGAATTCGCGTGTGGAAGCAACCAGATTGCATGGACAGAGGGTACCTCAAAGCAAGCTCTGGTGAGGTGAGAGCCATTTTGGCTTATAGCAACATGCTTTTCTCCACGCACAAGGATCACAAGATAAGAATATGGACCTTCACCGTTTCGGATAGCTTCAAGTCCAAGAAAGTAGGTACACTCCCTAGAAAAACTTCTATTCTTTTGTTCCCCTCAAGAGGAAAAAACACGCCAAAGCACAAAGATTCTGTGTCTTGCATGGCTTATTACCACTCTGAGGGTCTCTTGTACACTGGCTCCCACGACAGAACAGTGAAGGCGTGGCGTGTTTCAGATCGAAAATGCGTTGACTCGTTCGTGGCACACGAGGATAATGTCAACGCCATATTGGTGAACCAAGACGATGGTTGTGTTTTCACCGGTTCCTCTGACGGGTCGGTGAAGATATGGAGAAGGGTTTACACTGAAGACTCTCACACTCTTACCATGACTCTAAAGTTCCAACCTTCACCGGTCAATGCCCTTGCATTGAGTTGCTCGTTCAACCACTGTTTCCACTATTCAGGTTCCTCAGATGGGATGATAAATTTTTGGGAGAAGGAAAGGTTGTGTTATAGGTTCAACCACGGAGGGTTCTTGCAGGGTCACCGTTTTGCGGTTCTTTGTCTAGCAACGGTTGGGAACATGATATTCAGTGGGTCAGAGGACACGACAATTAGGGTTTGGAGGAGAGAGGAAGGGAGTTGCTACCACGAGTGTTTGACGGTTTTGGATGGACATAGAGGGCCAATGTGCATGGACTATAGTGACCAGTGTGAAGCCGCCACTAGGGTCAAGATTAGGGACTACGACATGAGCCCGGTTCTGTCGCCTTCCTGGGTCGAGAAGAAGCTTCAAGGTAGCTATTTTCAGTAG

Predicted protein sequences of Glyma04g08840

Limit To All Plant Sequences

>Glyma04g08840.2   sequence type=predicted peptide   gene model=Glyma04g08840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFYGKRTLLSLMDTEKPEQPPQSPVHLRVQTHREISEQDVQFSPPRPSSTTTSDGMFPMMMPDSPWTLSPLPTPSPSLLYHCIASLHRHEGNIYAIAASKGLVFTGSNSSRIRVWKQPDCMDRGYLKASSGEVRAILAYSNMLFSTHKDHKIRIWTFTVSDSFKSKKVGTLPRKTSILLFPSRGKNTPKHKDSVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFVAHEDNVNAILVNQDDGCVFTGSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALALSCSFNHCFHYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPMCMDYSDQCEAATRVKIRDYDMSPVLSPSWVEKKLQGSYFQ*

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