Glyma04g08810 - SoyBase

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Report for Sequence Feature Glyma04g08810

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6926017
stop:	6930059
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22810	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region \| chr3:8068595-8071559 FORWARD LENGTH=472	SoyBase	E_val: 2.00E-73	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0035091	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding	SoyBase	N/A	ISS
PTHR24730	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24730:SF7	Panther		JGI		ISS
PF05703	PFAM	Plant protein of unknown function (DUF828)	JGI		ISS
PF08458	PFAM	Plant pleckstrin homology-like region	JGI		ISS
UniRef100_B9RS23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ice binding protein, putative n=1 Tax=Ricinus communis RepID=B9RS23_RICCO	SoyBase	E_val: 7.00E-146	ISS
UniRef100_UPI0002339C70	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339C70 related cluster n=1 Tax=unknown RepID=UPI0002339C70	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08810

Paralog	Evidence	Comments
Glyma06g08887	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g083000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g08810

Limit To All Plant Sequences

>Glyma04g08810.3   sequence type=transcript   gene model=Glyma04g08810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAGCAACAGCTTAAGTTGGAGACAAGAATGAATGGCCTTTAAATTGGGTGTCCTTTTGCTCAGCACTAAGAATCTTTTACATTGTTTTAATTTTCCTTAATAAAAAACACCTAGAAACAACGTCACATTTTCTTGTTAAATATCTCACTGTTGCTCATTAGTCCTCTCAGCATCTTACCTTTGCGTCTTCAATTCTCACTCATGCCATGAGATTTTTCACCTCCCGTGTCTCCTGACTCGAGTGATTTCCACCTAGTAAATCTTTACAATGAGCCCAAGCGCCTCTAACTCTATATGCTCAGTTCATCAGCTGGAGAACATAGATGAGAATGCTCCTGCAGATTGGCCTGCATCATCCTGTCCCCCTCCTGATACTCCAACTGAATCTATGGAGTTCCTTGCGAGATCATGGAGTCTTTCAGCCATGGAACTCTCCAAAGCACTGCACAGCACCAACGTTACAATCTCCACCGGTATAGAGATGCCACTTTCGTGCCCTTCAGGCCACCAATTTGATACCAAGAGTTCCACTGCTTCCAAAGCTTTATCTAACGGGTGTTTCCCTCCATTTTTGCCAAAAGACAGTAATGAAAAGAAGGATTTACTTTTACTCCACCAAGCACTCAATCCAGAATTCCTTTCCAGTCAAAACTTGCTCAGAAATGGGGTATCTTGCAATCAACCTCATGATTATCTTCATCAGTTATGCTCAAATACCAACTCAATCTATTACTAAGTATTTTTTTTCATTTATTTTATTATTGGTGCAAATTATTGCTCACCAGCTTTACAGGAGCTTGCTAAGAGGTAGGACAATGGGTAGGTGGTTGAAAGATCAAAAGGAGAGGAAAAAGCAGGAAATTAGAACCCATAATGCTCATTTACACGCTGCAGTATCTGTGGCTGGTGTTGCTGCTGCTATTGCTGCAGTTGCAGCTTCAACAGCATCACCTGAAATGCCTTATGCAAACCAAAAGAACCCTCCCCCAGCTTCTTCTGCAATTGCATCTGCAGCAGCTTTAGTAGCCTCACACTGCATTGAGATTGCAGAAGATATGGGAGCTGAGCATGACCAAATATTAACAGTAGTCAACTCTGCCATTAATGCAAAAACCAATGGAGATATTATGACTTTAACAGCCGGAGCAGCCACAGCCTTGCGAGGAGCGGCTACTCTAAAGGCAAGGCTGCAGAAGGGGCCTGGAGCTACTTCAATTCCTCTAGTTGAGGAAAAGTGTGATGAAAGGAAAGAAGCAAACATCTTGACAGCACTGGATTATGTCTTTAGAGGTGGAGAACTTCTCAAACGTACAAGAAAAGGAGCTCTTCACTGGAAGCAAGTGTCTTTCAATATAAATTCAAATTTGCAGGTTGTAGTCAAAATGAAAAGCAAGCATATGGCAGGAACATTCACGAAAAAGAAGAAATATATAGTCACCGGAGTTTGCAATGATATCCCAGCTTGGCCCGGAAGGGAGAAGGAAGACATCAGTGAAAAGAGGGCATATTTTGGAATAAAAACAACAGACAGGACAATAGAATTTGAATGTGGAAGTAAAGGAGACAAACAGTTCTGGCTTGAGGGGATCCAGTATATGTTGAATTGCCGTGTCAAAGTAACATTATAAAAAAAAATACGATTGACATTGAGATTGCTGTATATATGCCTTTTTTTTTTCTTTCCCTTTCCCTCACACAGTGATTGGAGGGGTTACTTTATTAAGGAGTAGAGTTGACAGTGCCACTGTAAGATTTCACTGACAAAATTGTTGAGACTACCATTTCAGTGGAGATGTAAAGGATCTAGTCATCTAGAACCATGCCTATTGTCACTCTAATTCCTTCAGAAAATCAACATTATCAACAAATGCCTGCAAGAGGTAATAAACAAGTCAAGTTAT

Coding sequences of Glyma04g08810

Limit To All Plant Sequences

>Glyma04g08810.2   sequence type=CDS   gene model=Glyma04g08810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCCAAGCGCCTCTAACTCTATATGCTCAGTTCATCAGCTGGAGAACATAGATGAGAATGCTCCTGCAGATTGGCCTGCATCATCCTGTCCCCCTCCTGATACTCCAACTGAATCTATGGAGTTCCTTGCGAGATCATGGAGTCTTTCAGCCATGGAACTCTCCAAAGCACTGCACAGCACCAACGTTACAATCTCCACCGGTATAGAGATGCCACTTTCGTGCCCTTCAGGCCACCAATTTGATACCAAGAGTTCCACTGCTTCCAAAGCTTTATCTAACGGGTGTTTCCCTCCATTTTTGCCAAAAGACAGTAATGAAAAGAAGGATTTACTTTTACTCCACCAAGCACTCAATCCAGAATTCCTTTCCAGTCAAAACTTGCTCAGAAATGGGCTTTACAGGAGCTTGCTAAGAGGTAGGACAATGGGTAGGTGGTTGAAAGATCAAAAGGAGAGGAAAAAGCAGGAAATTAGAACCCATAATGCTCATTTACACGCTGCAGTATCTGTGGCTGGTGTTGCTGCTGCTATTGCTGCAGTTGCAGCTTCAACAGCATCACCTGAAATGCCTTATGCAAACCAAAAGAACCCTCCCCCAGCTTCTTCTGCAATTGCATCTGCAGCAGCTTTAGTAGCCTCACACTGCATTGAGATTGCAGAAGATATGGGAGCTGAGCATGACCAAATATTAACAGTAGTCAACTCTGCCATTAATGCAAAAACCAATGGAGATATTATGACTTTAACAGCCGGAGCAGCCACAGCCTTGCGAGGAGCGGCTACTCTAAAGGCAAGGCTGCAGAAGGGGCCTGGAGCTACTTCAATTCCTCTAGTTGAGGAAAAGTGTGATGAAAGGAAAGAAGCAAACATCTTGACAGCACTGGATTATGTCTTTAGAGGTGGAGAACTTCTCAAACGTACAAGAAAAGGAGCTCTTCACTGGAAGCAAGTGTCTTTCAATATAAATTCAAATTTGCAGGTTGTAGTCAAAATGAAAAGCAAGCATATGGCAGGAACATTCACGAAAAAGAAGAAATATATAGTCACCGGAGTTTGCAATGATATCCCAGCTTGGCCCGGAAGGGAGAAGGAAGACATCAGTGAAAAGAGGGCATATTTTGGAATAAAAACAACAGACAGGACAATAGAATTTGAATGTGGAAGTAAAGGAGACAAACAGTTCTGGCTTGAGGGGATCCAGTATATGTTGAATTGCCGTGTCAAAGTAACATTATAA

>Glyma04g08810.3   sequence type=CDS   gene model=Glyma04g08810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGAAGGATTTACTTTTACTCCACCAAGCACTCAATCCAGAATTCCTTTCCAGTCAAAACTTGCTCAGAAATGGGGTATCTTGCAATCAACCTCATGATTATCTTCATCAGTTATGCTCAAATACCAACTCAATCTATTACTAAGTATTTTTTTTCATTTATTTTATTATTGGTGCAAATTATTGCTCACCAGCTTTACAGGAGCTTGCTAAGAGGTAGGACAATGGGTAGGTGGTTGAAAGATCAAAAGGAGAGGAAAAAGCAGGAAATTAGAACCCATAATGCTCATTTACACGCTGCAGTATCTGTGGCTGGTGTTGCTGCTGCTATTGCTGCAGTTGCAGCTTCAACAGCATCACCTGAAATGCCTTATGCAAACCAAAAGAACCCTCCCCCAGCTTCTTCTGCAATTGCATCTGCAGCAGCTTTAGTAGCCTCACACTGCATTGAGATTGCAGAAGATATGGGAGCTGAGCATGACCAAATATTAACAGTAGTCAACTCTGCCATTAATGCAAAAACCAATGGAGATATTATGACTTTAACAGCCGGAGCAGCCACAGCCTTGCGAGGAGCGGCTACTCTAAAGGCAAGGCTGCAGAAGGGGCCTGGAGCTACTTCAATTCCTCTAGTTGAGGAAAAGTGTGATGAAAGGAAAGAAGCAAACATCTTGACAGCACTGGATTATGTCTTTAGAGGTGGAGAACTTCTCAAACGTACAAGAAAAGGAGCTCTTCACTGGAAGCAAGTGTCTTTCAATATAAATTCAAATTTGCAGGTTGTAGTCAAAATGAAAAGCAAGCATATGGCAGGAACATTCACGAAAAAGAAGAAATATATAGTCACCGGAGTTTGCAATGATATCCCAGCTTGGCCCGGAAGGGAGAAGGAAGACATCAGTGAAAAGAGGGCATATTTTGGAATAAAAACAACAGACAGGACAATAGAATTTGAATGTGGAAGTAAAGGAGACAAACAGTTCTGGCTTGAGGGGATCCAGTATATGTTGAATTGCCGTGTCAAAGTAACATTATAA

Predicted protein sequences of Glyma04g08810

Limit To All Plant Sequences

>Glyma04g08810.2   sequence type=predicted peptide   gene model=Glyma04g08810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPSASNSICSVHQLENIDENAPADWPASSCPPPDTPTESMEFLARSWSLSAMELSKALHSTNVTISTGIEMPLSCPSGHQFDTKSSTASKALSNGCFPPFLPKDSNEKKDLLLLHQALNPEFLSSQNLLRNGLYRSLLRGRTMGRWLKDQKERKKQEIRTHNAHLHAAVSVAGVAAAIAAVAASTASPEMPYANQKNPPPASSAIASAAALVASHCIEIAEDMGAEHDQILTVVNSAINAKTNGDIMTLTAGAATALRGAATLKARLQKGPGATSIPLVEEKCDERKEANILTALDYVFRGGELLKRTRKGALHWKQVSFNINSNLQVVVKMKSKHMAGTFTKKKKYIVTGVCNDIPAWPGREKEDISEKRAYFGIKTTDRTIEFECGSKGDKQFWLEGIQYMLNCRVKVTL*

>Glyma04g08810.3   sequence type=predicted peptide   gene model=Glyma04g08810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRRIYFYSTKHSIQNSFPVKTCSEMGYLAINLMIIFISYAQIPTQSITKYFFSFILLLVQIIAHQLYRSLLRGRTMGRWLKDQKERKKQEIRTHNAHLHAAVSVAGVAAAIAAVAASTASPEMPYANQKNPPPASSAIASAAALVASHCIEIAEDMGAEHDQILTVVNSAINAKTNGDIMTLTAGAATALRGAATLKARLQKGPGATSIPLVEEKCDERKEANILTALDYVFRGGELLKRTRKGALHWKQVSFNINSNLQVVVKMKSKHMAGTFTKKKKYIVTGVCNDIPAWPGREKEDISEKRAYFGIKTTDRTIEFECGSKGDKQFWLEGIQYMLNCRVKVTL*

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