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Report for Sequence Feature Glyma04g08761

Feature Type:gene_model
Chromosome:Gm04
Start:6887853
stop:6892398
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08761
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28940AT Annotation by Michelle Graham. TAIR10: Phosphorylase superfamily protein | chr4:14274414-14276920 FORWARD LENGTH=348 SoyBaseE_val: 3.00E-57ISS
GO:0009116GO-bp Annotation by Michelle Graham. GO Biological Process: nucleoside metabolic process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
PTHR21234Panther PURINE NUCLEOSIDE PHOSPHORYLASE JGI ISS
PTHR21234:SF10Panther SUBFAMILY NOT NAMED JGI ISS
PF01048PFAM Phosphorylase superfamily JGI ISS
UniRef100_G7ZWI8UniRef Annotation by Michelle Graham. Most informative UniRef hit: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Medicago truncatula RepID=G7ZWI8_MEDTR SoyBaseE_val: 8.00E-80ISS
UniRef100_UPI0002339C6FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339C6F related cluster n=1 Tax=unknown RepID=UPI0002339C6F SoyBaseE_val: 7.00E-122ISS

Expression Patterns of Glyma04g08761
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g08761 not represented in the dataset
Glyma04g08761 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08761
ParalogEvidenceComments
Glyma06g08860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08761 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g082600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g08761
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g08761
>Glyma04g08761.1   sequence type=CDS   gene model=Glyma04g08761   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTATGGGCTAGGGCCTGATGACACATTACCCTTGGAAGACAATGGAGACTACACCAGGGAAATAGGGCACTTAAATTTTGCAAATTTCACCTCAAACGTAACTGCAGATAGTGTTCCGGAAGTAAGGCAACATGTCTTCTGGGTTCCGGTTGATTCCAAGTACTATCACATTGCCAAAAAGTTGAAGCTAGAGTCGTGCATAAACTCGAAGACATGCTTAACAACGACACCGAAGCTGGAGCTTGTGAATAGAGGTATTAGCCAAAGCATCTACCTTGACAATGCAGCATACAGGTCTTTCATCTACAACGAATTTGATGTGAGCCCAGTAGACATGGAAAGTGCGTCAGTGGCTCTTATTTGCTATCAACAAAGGGTACCCTTCATTGCTATTAGGGCTCTCCCCGACTTGGCCGGTGGTGGCTCCGCCGAGTCCAATGAGGCTGATACCTTCTTATCAATAGCTGCCACCAACTCTGTCACTGTGGTCATTGAGTTCGTGAAGCTCTTGTCACTCCACTCTAAGTGGTGGTCCATGTAA
Predicted protein sequences of Glyma04g08761
>Glyma04g08761.1   sequence type=predicted peptide   gene model=Glyma04g08761   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYGLGPDDTLPLEDNGDYTREIGHLNFANFTSNVTADSVPEVRQHVFWVPVDSKYYHIAKKLKLESCINSKTCLTTTPKLELVNRGISQSIYLDNAAYRSFIYNEFDVSPVDMESASVALICYQQRVPFIAIRALPDLAGGGSAESNEADTFLSIAATNSVTVVIEFVKLLSLHSKWWSM*






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