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Report for Sequence Feature Glyma04g08750

Feature Type:gene_model
Chromosome:Gm04
Start:6871849
stop:6877898
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32770AT Annotation by Michelle Graham. TAIR10: tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) | chr4:15804981-15807790 FORWARD LENGTH=488 SoyBaseE_val: 0ISS
GO:0006631GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0009915GO-bp Annotation by Michelle Graham. GO Biological Process: phloem sucrose loading SoyBaseN/AISS
GO:0010189GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin E biosynthetic process SoyBaseN/AISS
GO:0010264GO-bp Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process SoyBaseN/AISS
GO:0015994GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process SoyBaseN/AISS
GO:0016122GO-bp Annotation by Michelle Graham. GO Biological Process: xanthophyll metabolic process SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009706GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0010287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule SoyBaseN/AISS
GO:0009976GO-mf Annotation by Michelle Graham. GO Molecular Function: tocopherol cyclase activity SoyBaseN/AISS
UniRef100_G7ZWJ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Tocopherol cyclase n=1 Tax=Medicago truncatula RepID=G7ZWJ2_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI00023394E4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023394E4 related cluster n=1 Tax=unknown RepID=UPI00023394E4 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g08750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08750
ParalogEvidenceComments
Glyma06g08850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g082500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g08750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g08750
>Glyma04g08750.1   sequence type=CDS   gene model=Glyma04g08750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCCAAGCTCTGGGAGGCTCGTCTTTTCTCTCCAACACTCCCTCTTCTTCCTCCTACTCCTCGTCTTCCTTCTCTCAATCTTCACTTTCCCTCATCATCAACTTCAACGCTCCACCTAGCTCGCAATTCTGTCTCAGATACCGTTCCCATTCAAAATGAGGAAAAGGAACAAACTCTGTCTTCTGTCAAACCTACTTACTCCCCCACTCTTCCCAATCGAGACCTACGAACCCCTCATAGCGGGTACCATTTCGATGGGACTACTCGCAAATTCTTCGAGGGTTGGTACTTCAAAGTCTCCATTCCCGAACGGAGGCAGAGCTTTTGCTTCATGTATTCCGTCGAGAGTCCCTCCTTTCGTAAGCCACTGACGCCGCTCGAACTGGCCCAATACGGGCCCAGGTTTACCGGTGTCGGGGCCCAAATTCTCGGTGCCGATGACAAATATATTTGCCAATACTCTCCCCAATCACAATTCTTCTGGGGAAGTAGGCATGAACTGATGTTGGGGAACACTTTCGTGTCCAACCAAAATTCTAAGCCTCCAAACAAGGAAGTCCCTCCTCAGGAATTTAATGATAGAGTGCTGGAAGGTTTTCAAGTCACCCCCCTTTGGCATCAAGGTTTTATTCGCGATGATGGAAGGTCAAATTATGTAGAGACGGTAAAGACAGCTCGTTGGGAGTATAGTACACGTCCTGTATATGGTTGGGGTGATGTTGGTTCTACGCAGAAGTCTACTGCTGGGTGGCTTGCAGCTTTTCCTGTTTTTGAACCACATTGGCAAATATGCATGGCTGGTGGACTGTCAACAGGTTGGATAGAGTGGGATGGCGAGAGGATTGAGTTTGATAATGCTCCATCTTATTCAGAAAAGAACTGGGGTGGAGGATTCCCAAGAAAATGGTTTTGGGTTCAATGTAATGTTTTTGAAGGTGCTAGTGGAGAAATTGCTCTTACAGCAGCTGGTGGATTGAGGCAAATTCCTGGAATAACCGAGACCTTTGAAAATGCTGCATTGATTGGAATTCATTATGGTGGAAATTTTTATGAATTTGTGCCATGGAATGGTGTTGTTAACTGGGAAGTTACTACTTGGGGTTATTGGTTTATGTCAGCAGACAATGGCAAATATGTGGTTGAATTAGAAGCAACAACAGAGGATCCAGGTACAACATTGCGTGCTCCAACAGCAGAAGCTGGCTTTGCCCCTGCATGTAAAGATACATGCTTTGGAAATCTAAAATTACAAATGTGGGAACGAAGATATGATGGCAGCAAGGGGAAGATCATATTGGACGTTTCAAGTAACATGGCAGCACTAGAAGTTGGAGGAGGTCCATGGTTTAACACTTGGAAGGGCAAGACATCAACTCCAGCAGCCCTTAGCCGTGTCCTTGAATTACCCATAGACGTAGAGGGCATTTTCAATCCTGTTCCTCTATTTAAACCGCCTGGCCTGTAG
Predicted protein sequences of Glyma04g08750
>Glyma04g08750.1   sequence type=predicted peptide   gene model=Glyma04g08750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKLWEARLFSPTLPLLPPTPRLPSLNLHFPSSSTSTLHLARNSVSDTVPIQNEEKEQTLSSVKPTYSPTLPNRDLRTPHSGYHFDGTTRKFFEGWYFKVSIPERRQSFCFMYSVESPSFRKPLTPLELAQYGPRFTGVGAQILGADDKYICQYSPQSQFFWGSRHELMLGNTFVSNQNSKPPNKEVPPQEFNDRVLEGFQVTPLWHQGFIRDDGRSNYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERIEFDNAPSYSEKNWGGGFPRKWFWVQCNVFEGASGEIALTAAGGLRQIPGITETFENAALIGIHYGGNFYEFVPWNGVVNWEVTTWGYWFMSADNGKYVVELEATTEDPGTTLRAPTAEAGFAPACKDTCFGNLKLQMWERRYDGSKGKIILDVSSNMAALEVGGGPWFNTWKGKTSTPAALSRVLELPIDVEGIFNPVPLFKPPGL*






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