Glyma04g08710 - SoyBase

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Report for Sequence Feature Glyma04g08710

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6839860
stop:	6847708
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11560	AT	Annotation by Michelle Graham. TAIR10: catalytics \| chr5:3709734-3713994 REVERSE LENGTH=982	SoyBase	E_val: 0	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG2103	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR21573	Panther	UNCHARACTERIZED	JGI		ISS
PF07774	PFAM	Protein of unknown function (DUF1620)	JGI		ISS
UniRef100_B9RS37	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RS37_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JUT9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUT9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08710

Paralog	Evidence	Comments
Glyma06g08810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g082000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08710

Limit To All Plant Sequences

>Glyma04g08710.1   sequence type=CDS   gene model=Glyma04g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATGACGATTAGGGTTTTCCTCATCCTTCTACTCTTTCTCTCATCTACTCATCTCAGTTACTCGCTTTACGAAGATCAAGTTGGCCTCATGGATTGGCATCAACAGTACATTGGGAAAGTAAAGCACGCTTTGTTCCATACTCAAAAGTCTGGACGCAAGCGTGTTTTAGTATCCACCGAAGAGAATGTTGTAGCTTCACTCGACCTTCGTCGTGGAGAGATTTTTTGGAGGCATGTTCTTGGGACCAATGATGTTGTTGATGGACTTGACATTGCCCTGGGAAAATATGTCATAACTCTTTCCTCGGATGGAAGTATATTGAGAGCATGGAACCTTCCTGATGGACAGATGGTTTGGGAGTCTTTCCTTCAGGGATCAGTGGCATCAAAGTCAATATTATACATTCCAAAAAACCTGAAAGCCGACAAGGATGATTTGATCCTTGTTTTTGGTAAAGGTTGTCTCCATGCTGTTTCCAGCATAGATGGTGAAGTTCTCTGGAAGAAAGATTTTGTGGGTGAAAGCATTGAGGTTAACCATATTATTCAGTCTACCGACGAGATATATGTAGCTGGTTTTGTTGGTTCTTCAAAGTTTTATGTGTATGGATTGAATGCTAAGAATGGAGAATTGCTAAAGAATGATCATAAAGCACTTCCTTGTGATACTTTTGGGGAATTATTATCAGTCTCAGGTGATAAGTTTGTTGTGTTGGATAAAACGAGGTCTAAGATACTAACAATAAACATCAAGAATGGAGAGATTAGTTACAAACAGAAGCCTATTTCAGACCTCATCGAGGATTCATCTGGACAGGCAGTAATATTACCATCAAGGCTTCCAGAGTTGTTTGCATTACGTATCAATTCCCATGTTCTTTTAATTAAAGTGACAAATGAAGGTGAGTTGGTGCTGGTTGACAAAATTAATAATGCAGCAGCTGTTAGCGATGCTTTGTCAATTCCAGAGGGTCAGCATGCTTTTGCATTTGTTCAACATGAAGACAGTAAAATTCACCTATTTGTAAAGGATGTTAATGATTGGAATGGTGATTTGCTCAAGGAAAGAGTAGTAATAGACCATCAAAGAGGGAACGTTGATAAGATTTTTATAAACAATTATGTGAGGACAGATAGATCTTACGGTTTTAGAGCATTGATGGTAATGGAGGATCATTCACTCTTATTAGTACAACAAGGAGAAATTGTCTGGAGTAGAGAGGATGGTCTTGCATCAGTTGTAGATGTAACCGCATCTGAACTACCTGTGGAAAAGGAAGGTGTATCTGTGGCAAAAGTGGAACAGAACCTCTTTGAATGGCTTAAGGGACATGTGCTGAAGCTCAAAGGAACTTTAATGATTGCAAGTGCTGAGGATGTAGTAGCTATTCAAGCGCTGAGGTTAAGGAGTTCCGAGAAAAGCAAAATGACTCGTGATCATAATGGTTTTCGTAAGTTGCTTATAGTACTTACAAGGGCAGGAAAGGTTTTTGCTTTGCACACTGGAGATGGGCGTGTAGTTTGGTCTATTCTACTTCATACTCTGCGTAAAACAGAAGTGTGTGAACATCCGATTGGGCTTAACATTTATCAGTGGCAGGTTCCACATCATCATGCATTGGATGAGAATCCTTCTATCCTTGTAGTTGGGCGATGTGGACCAAGTTTGGCTGCACCATCTGTTCTTTCTTTTATTGATGCATACACAGGGAAGGAACTCAATTCTTTGAGTCTTGCTCATACTGTTGCTCAAGTTATTCCACTGCCTTATACTGATTCAACTGAACAGCGTCTGCATCTAATTATAGACATAAACCGATATGCATACCTATACCCAAGAACTTCTGAAGCTATTGGCATTCTGCAACGTGAATTTTCAAATGTGTACTGGTACTCAGTTGATGCTGATAATGGTGTTATCAGAGGTCATGCCTTGAAGAGCAATTGCATTCACAAAGTAGTGGATGAATACTGCTTTGACTTCAGGAATTTATGGTCTATTGTATTCCCATCTGAATCAGAAAAGATTATTGCAACAGTAACAAGAAAATCAAATGAGGTTGTTCATACTCAAGCAAAAGTTATGACTGACCACGATGTCATGTATAAGTATGTATCGAAGAATGTACTTTTTGTCGCAAATGCAGCACCAAAAGCCAGTGGGGAAATTGGAACAGCCACCCCAGAGGAGGCATCGTTGGTCATCTATATCATTGATACTGTGACTGGTCGCATATTGCATCGCATGACACACCATGGTTGCCAGGGTCCTGTTCATGCTGTATTTAGTGAAAACTGGGTTGTCTACCACTATTTTAATCTCAGAGCACACAGATATGAGATGTCAGTTGTTGAGGTCTATGATCAGTCTCGAGCGGATAACAAAGATGTCTGGAAGTTTGTTCTTGGGAAGCATAATCTTACATCACCCATCTCTTCTTATTATCGAGCAGAAGTTGTTACAAAATCACAGTCATACTTTTTTACCCATTCTGTGAAAGCAATAGAGGTGACTTCGACGGCCAAGGGTATAACCTCTAAGCAGCTTCTTATTGGAACAATTGGTGATCAGGTTCTGGCACTTGATAAACGCTTTTTGGATCCCCGGCGCACACTTAATCCCTCACAAGCTGAAAAAGAAGAAGGAATTATTCCTCTTACCGATTCATTGCCCATCATTTCTCAGTCCTACATTACACATTCCCTTAAAGTGGAAGGTCTCCGAGGCATTGTAACTGTGCCTGCCAAGCTGGAGTCTACATCCCTCGTCTTTGCCTATGGAGTAGATCTATTTTTTACTCAGATTGCTCCTTCTAGGACTTACGATTCACTAACTGAAGATTTCAGCTATGCTCTACTTCTTCTTACAATTGTTGCACTTGTCGCTGCAATATTTGTCACTTGGGTATTATCCCAGAGGAAAGATCTACAAGAGAAATGGAGATGA

Predicted protein sequences of Glyma04g08710

Limit To All Plant Sequences

>Glyma04g08710.1   sequence type=predicted peptide   gene model=Glyma04g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMTIRVFLILLLFLSSTHLSYSLYEDQVGLMDWHQQYIGKVKHALFHTQKSGRKRVLVSTEENVVASLDLRRGEIFWRHVLGTNDVVDGLDIALGKYVITLSSDGSILRAWNLPDGQMVWESFLQGSVASKSILYIPKNLKADKDDLILVFGKGCLHAVSSIDGEVLWKKDFVGESIEVNHIIQSTDEIYVAGFVGSSKFYVYGLNAKNGELLKNDHKALPCDTFGELLSVSGDKFVVLDKTRSKILTINIKNGEISYKQKPISDLIEDSSGQAVILPSRLPELFALRINSHVLLIKVTNEGELVLVDKINNAAAVSDALSIPEGQHAFAFVQHEDSKIHLFVKDVNDWNGDLLKERVVIDHQRGNVDKIFINNYVRTDRSYGFRALMVMEDHSLLLVQQGEIVWSREDGLASVVDVTASELPVEKEGVSVAKVEQNLFEWLKGHVLKLKGTLMIASAEDVVAIQALRLRSSEKSKMTRDHNGFRKLLIVLTRAGKVFALHTGDGRVVWSILLHTLRKTEVCEHPIGLNIYQWQVPHHHALDENPSILVVGRCGPSLAAPSVLSFIDAYTGKELNSLSLAHTVAQVIPLPYTDSTEQRLHLIIDINRYAYLYPRTSEAIGILQREFSNVYWYSVDADNGVIRGHALKSNCIHKVVDEYCFDFRNLWSIVFPSESEKIIATVTRKSNEVVHTQAKVMTDHDVMYKYVSKNVLFVANAAPKASGEIGTATPEEASLVIYIIDTVTGRILHRMTHHGCQGPVHAVFSENWVVYHYFNLRAHRYEMSVVEVYDQSRADNKDVWKFVLGKHNLTSPISSYYRAEVVTKSQSYFFTHSVKAIEVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRTLNPSQAEKEEGIIPLTDSLPIISQSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDSLTEDFSYALLLLTIVALVAAIFVTWVLSQRKDLQEKWR*

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