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Report for Sequence Feature Glyma04g08700

Feature Type:gene_model
Chromosome:Gm04
Start:6836678
stop:6837541
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11550AT Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr5:3708203-3709147 REVERSE LENGTH=314 SoyBaseE_val: 9.00E-66ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
UniRef100_G7ZWJ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ZWJ9_MEDTR SoyBaseE_val: 2.00E-88ISS
UniRef100_I1JUT8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JUT8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g08700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08700
ParalogEvidenceComments
Glyma06g08800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08700 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g081900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g08700
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g08700
>Glyma04g08700.2   sequence type=CDS   gene model=Glyma04g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCGTTCTTCCGGCACTGGGGCCAAAACCTCTTCAGCCCCGACGGCACCACCCCTCCTCCCTTTCCAATGCGAATCCTCCACGTCTTCCTCATCCGCCACTTCCCAAAGCTTCACCCAGTGGAGATTCTCTCCTCCAACCCCCAACACCACCACCAATAACAATAACAACAACCTCATCCAAACAAACACTAATCCTCCTTCTCCACCTCCACCACCTCAAATCCACAACCTCCAAGAACTCTTCCACATTTCAGAATTCCAACTATCAACCGACCCCACCTCAGCCCTCAACCTTCTAGAACGTTCTCTTGTCCCCAATCCTCCCCAAGAGCAACCGCCGTGCCCTCCCAACCTCATGCGCGCCCTCACCGCCAACCTCGCCCAGGCCAAGCCCGCCACCAAGATCCTCTTCGCCCTCTGCCTCTCCGACGCCAACCGCCGCGTCGCCGTCGAGGCCGGCGCCGTCTCCGCCGTCGTGGAGGCCGCCCCCGACCTCGACGGCGCCCCCGCCGAGCGCGCCCTCGCTGCCCTCGAGCTCATGTGCACGCTCCCCGAAGGCGCCGAGGAGCTCCGCGCCCACGCCCTCGCCGTCCCCGTCATGGTCACCATGATGGCCAAGACCGCCGCAAGGGGCAAGGAGTACGCCATCGGAGCCCTCGCCGTCGTCTACGGCGCCGCCGGCGCCGAGAACCACTACACCGCGCCTCCCGAAGAGGTGGCGCGTGCGGTGGAACTCGCCCTGCAGGGCGAGTGCAGCGCCAGGGGGAGGAGGAAAGGGACGCAGCTGCTGAAGACGCTGCAACAACTCTCTCAGGCTGAGATTGAAGCTTCTGAGACTCACGCTCACGACGGCAATTGA
Predicted protein sequences of Glyma04g08700
>Glyma04g08700.2   sequence type=predicted peptide   gene model=Glyma04g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRSSGTGAKTSSAPTAPPLLPFQCESSTSSSSATSQSFTQWRFSPPTPNTTTNNNNNNLIQTNTNPPSPPPPPQIHNLQELFHISEFQLSTDPTSALNLLERSLVPNPPQEQPPCPPNLMRALTANLAQAKPATKILFALCLSDANRRVAVEAGAVSAVVEAAPDLDGAPAERALAALELMCTLPEGAEELRAHALAVPVMVTMMAKTAARGKEYAIGALAVVYGAAGAENHYTAPPEEVARAVELALQGECSARGRRKGTQLLKTLQQLSQAEIEASETHAHDGN*






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