Glyma04g08680 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g08680

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6811647
stop:	6818461
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11530	AT	Annotation by Michelle Graham. TAIR10: embryonic flower 1 (EMF1) \| chr5:3697140-3700930 FORWARD LENGTH=1096	SoyBase	E_val: 2.00E-28	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0009791	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic development	SoyBase	N/A	ISS
GO:0009910	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development	SoyBase	N/A	ISS
GO:0010022	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem determinacy	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048367	GO-bp	Annotation by Michelle Graham. GO Biological Process: shoot development	SoyBase	N/A	ISS
GO:0070734	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K27 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003690	GO-mf	Annotation by Michelle Graham. GO Molecular Function: double-stranded DNA binding	SoyBase	N/A	ISS
GO:0003697	GO-mf	Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
UniRef100_G7ZWE8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EMBYO FLOWERING 1-like protein n=1 Tax=Medicago truncatula RepID=G7ZWE8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339C6D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339C6D related cluster n=1 Tax=unknown RepID=UPI0002339C6D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08680

Paralog	Evidence	Comments
Glyma06g08787	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g081800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08680

Limit To All Plant Sequences

>Glyma04g08680.1   sequence type=CDS   gene model=Glyma04g08680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCTTATATTCACATTGATTCAATCTCTATCGATCTTGCCGATTCTATTGGCAAGAGAGATGCAGGCAAATGTGAACATTTCTCGATACGTGGATATGTGTCTGAAATGCGCAAAAAGGACTGGAAAAATTGTTGGCCATTTACAGTACATGAGTCTGACAAACAACCATCATTTCTGCCATTAGATGTACCAAAATATAGATGTCGGCATTGTCAGAACTCTGCACAAGAAATTGCTGCCAAGGACATCCAGAGAGATGACCAAACAAACTTTGATTGTTGCAGTACTGGATGCATATCTGGTAGCAATTGCAATAATGCAGCTCTTAAGTCTGTTATTCAGCAAGATCCAATGCTTGACACTCTTGAGATGAGAGAAATTGATCTTAATACTACCCTGAGCTGTGTCAATGATTACTTAACAAATAATGAGAAAGGCAAGAAAGGTGGAGTCGTACCTAGCAGAATAATTGACCTTGAGTTTGGCTTGGAGGATAATCTCAATCACCAAGTAACTAGTATTCCATCACCTAAAAACTATACAGACCTCGCACCAGAAGTGCACACTACTAAGAAAGGTGAAGGTAATGAAGTTTCTTTTCCTGAGCTTGCTAGCAATTTGAAATGCATGGAGAAGAATTCTGCTGAGATGTGTAATGGTGGAACACCAGCAGATAACCAATGCCAGAAAGATTTAATAAAAGCTTGCACAGTTTTGGGGAAAGGAACAACAGTAATGGAGGTGGACAATACAGACGATCACCCAACTGGACCTTCTCTTGAACCAGTTGCTTGTAATAATGCTGCACCTGCAGGAAGTGTGGACAATACAGTTGAAAATGATTTTCAGGATCATCATTCAGAAAAGTCCACTGGTTTGTCTCGTAGGAGGCCTCGGAAGGTGCGCTTGATGGCTGACTTATTAAGTGACAATGGTGAATTGAAGACTGAGCAAATTTCTATACAAGAATCTGTATCCCTTGGTACTTCCAATGCCTCTGCAGCTTCCCAGGCACACTCAATGGTGCCAGGAAAGGTGGATATTCAAAGTTGTTTGACTTTGACAAGCACAGGTCCAAGTAGAAAAAGGAAGTTTCCTCTGGATGAGGTACTGAGACCTGCAAGCATGTGTAATGAAGTTCTGAACTCAGAGGGAAATGAAAAAACAGCTGATACTGTTTTGGATACTAGATCCAATTTTAAAGATGTACCCACAGGATTAGGTTTACAAGATGTTGCAAAGGGACACTGGAGTAAAACTGAAACCGAAAGAAGCCATATCATTGGCAAGAAGAAATACAAAAAGATTCAAGTTGTAGATAATTGCTTGATTCCTGAGCAACCACAAGGACATCAAAGAGAAAATGAAGACACTGTGGATACTACAGACAAGGTATATGCATCTAAAACTAATTCTTCTAGATTAGCTCCCTGTGCATTCACAGGGAAAGGGATGGATAATTTTCCTATCCGCCCCCTAAGAATAGAAAATGAATTCAATTTGTCCAAAGAAAAGGGGAAAATGCTGCAAACTGACAGGGAGCTGGATTCTTTATCCTGGCACAAAAATAACATGCTTGTACAAGATTCCTGTGCATATTCAGGGGAAAAAGCCAGGTCTAATATGCCTGTAACAATTCCAATTCCTTCAGCCCAAGGGGTGCTAAAAGGAAGAGGACTGGAAGAGGGACTTCATCTTTCTCTAAACAATTATTTGGTGGATGCACAAGTTTACAACAAAAAATCTATCCATCAAATTGGAAATCACCTACCTTACTCAATGCCTTTTGAAGATGGAACTTCAAAAGTACCACTGCTTAATTGGAAGGACAGTGACACTAATGTTTTTGGAGGGCAAAACATTCCTTCGAAGAACCCAACTGGAAAAGGAGTTCATTGTGAAGAAATTAATGGTGCAAGAACCGTACAAAAAACTATTGAAGCTGTGGACCAACTAGGTTTTATGAAAAGATACAGTGAACAAACAGTCGAGGTGTCTGAGCAGGGAACACTTGATGATATACCCATGGAAATTGTGGAACTCTTGGCGAAGAATCAGTATGAGAGATGTCTTCCTGATGTAGAAAATAGAAGTTCCACATTAGAAAAACCTACTCTTGGAAGGAAAGCACAGATGACAGGTGGTTCTACTGTACACAGAAAAGGGGAGATGAGCTTGTTAAAAGACAGCCAAAAGGAGAAACCTCAGGGAAGACATAAGAAAAACATGGTCACAAGAGGAGAGAATGTGAAGCCTAGCAAAAGAAAGCCAGTTAATTATTTTTCTCCATTTGATGGAAACAATTTGGGCATGAATAATATCTGTCCACCTCAATCCACCTTTGGACTTGAAGTTTCCCAGTCCCAAAAGAAGCCATCAAGTGGATTCCAGTTTTCACCTATTGGTTCTAGCCAGCTTGGTAGTGCTCGAAGTTTCAGGTTGAATGGGACTTTTGAAGAGCGTGGATCCCCTAATGCTACTTTTCAAGCCCCTGGAGGATGTAGCTTACACAAGAATATCCTACATCAGGATGATGAAGCTTCTCGCATCTGGGCATCCTTGACTTCAAATTCCCAAGGATATGATTTTCCCAAAAAGGTTGTTTCTTCTCAGCATCCTAGTAGTAGTGTGGACATAACTTCACTCCAATCTGGTTCATTTCATAAGCAAAACATGAAGAGGGATATTGATCTAAACTACATGAATCTGAATGCTGCTGGACTAGAAAAGCTTAGTAGGAATTCAAGTTCTGAAACCTTCAACAGGATGAATGGAGAATATTCATTTCCTTGCAAACATAGTGGAATGGAGCCTCATCAAAATTTGAGGGGATCTCTTGATTTGTATTCTAATGAAACAATACCAGCCATGCATTTACTCAGCCTTATGGATGCAGGCATGCAGTCCCGTACAGCTTTTGATGTGGGTGTCAGTTCTCAGATGCTTAAGAGGCCCTCTTATCTGGGTGATTGCAATACTAAGTTGGAGATTGGTACATCTAAGACCCCTGGTACCCTGAAAAGACCATCATCTGATTATTACAGCAGAAGCTTCTTACCAGATAAGCATGGCTGTTTTGCTGGCTCTCCAACCTTTGGTGCATCTTCATCAACCCCGCATGATAAGAAATTAATAAGGGCTACTGCTTTCAACGGTCAAAATCCAATGAAGTCTGGAAGGAAAGAGAAGATGAAGAGCTCCAACTCTACCCTGCAGAATAAAGTTAGTAAGCAAATTTGCTGGCCTCGTAATGAAACCGAAACATCACTGCAGCGCAAATTGGAAGTTAATGGCAATCATGAAACCCCTGTGCCATATAAAATCATCTCTGGAAACACATGTATGGTGAACAGGAATCCAGCAGATCTCACCATACCAGAAACAGGGAATATCTATATGATCAGAGGAGAAGATCTGAAATTCGAGAAGAATTTTCCCAAAAAAAGGCCTCGCTTCCCCATTCCATATGGATCAAAGCAGCAGAAGAATTTGAAGGGAACTAAAATGAAAGAACATTCAAAACATTGA

Predicted protein sequences of Glyma04g08680

Limit To All Plant Sequences

>Glyma04g08680.1   sequence type=predicted peptide   gene model=Glyma04g08680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSYIHIDSISIDLADSIGKRDAGKCEHFSIRGYVSEMRKKDWKNCWPFTVHESDKQPSFLPLDVPKYRCRHCQNSAQEIAAKDIQRDDQTNFDCCSTGCISGSNCNNAALKSVIQQDPMLDTLEMREIDLNTTLSCVNDYLTNNEKGKKGGVVPSRIIDLEFGLEDNLNHQVTSIPSPKNYTDLAPEVHTTKKGEGNEVSFPELASNLKCMEKNSAEMCNGGTPADNQCQKDLIKACTVLGKGTTVMEVDNTDDHPTGPSLEPVACNNAAPAGSVDNTVENDFQDHHSEKSTGLSRRRPRKVRLMADLLSDNGELKTEQISIQESVSLGTSNASAASQAHSMVPGKVDIQSCLTLTSTGPSRKRKFPLDEVLRPASMCNEVLNSEGNEKTADTVLDTRSNFKDVPTGLGLQDVAKGHWSKTETERSHIIGKKKYKKIQVVDNCLIPEQPQGHQRENEDTVDTTDKVYASKTNSSRLAPCAFTGKGMDNFPIRPLRIENEFNLSKEKGKMLQTDRELDSLSWHKNNMLVQDSCAYSGEKARSNMPVTIPIPSAQGVLKGRGLEEGLHLSLNNYLVDAQVYNKKSIHQIGNHLPYSMPFEDGTSKVPLLNWKDSDTNVFGGQNIPSKNPTGKGVHCEEINGARTVQKTIEAVDQLGFMKRYSEQTVEVSEQGTLDDIPMEIVELLAKNQYERCLPDVENRSSTLEKPTLGRKAQMTGGSTVHRKGEMSLLKDSQKEKPQGRHKKNMVTRGENVKPSKRKPVNYFSPFDGNNLGMNNICPPQSTFGLEVSQSQKKPSSGFQFSPIGSSQLGSARSFRLNGTFEERGSPNATFQAPGGCSLHKNILHQDDEASRIWASLTSNSQGYDFPKKVVSSQHPSSSVDITSLQSGSFHKQNMKRDIDLNYMNLNAAGLEKLSRNSSSETFNRMNGEYSFPCKHSGMEPHQNLRGSLDLYSNETIPAMHLLSLMDAGMQSRTAFDVGVSSQMLKRPSYLGDCNTKLEIGTSKTPGTLKRPSSDYYSRSFLPDKHGCFAGSPTFGASSSTPHDKKLIRATAFNGQNPMKSGRKEKMKSSNSTLQNKVSKQICWPRNETETSLQRKLEVNGNHETPVPYKIISGNTCMVNRNPADLTIPETGNIYMIRGEDLKFEKNFPKKRPRFPIPYGSKQQKNLKGTKMKEHSKH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain