SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G25770 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:8969308-8971389 REVERSE LENGTH=360 | SoyBase | E_val: 3.00E-141 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ senescence | SoyBase | N/A | ISS |
| GO:0046482 | GO-bp | Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PTHR17630 | Panther | DIENELACTONE HYDROLASE | JGI | ISS | |
| PTHR17630:SF20 | Panther | CARBOXYMETHYLENEBUTENOLIDASE | JGI | ISS | |
| PF00326 | PFAM | Prolyl oligopeptidase family | JGI | ISS | |
| UniRef100_B9RS30 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RS30_RICCO | SoyBase | E_val: 3.00E-154 | ISS |
| UniRef100_UPI000233A30D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A30D related cluster n=1 Tax=unknown RepID=UPI000233A30D | SoyBase | E_val: 0 | ISS |
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Glyma04g08651 not represented in the dataset |
Glyma04g08651 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g081600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g08651.1 sequence type=CDS gene model=Glyma04g08651 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGCTATGGCGGTCCTTACTCTCACTATAAAATCCAAAACAAATTGGCGGGAAAAGAAGCCATCGAAGAAGTTCAGAGTCAGAGCAAGCTCCGATCAGAGTTCCTGCAAGTCCTGCGTACTAGGCGACCTGCTCAAGAATCGACTCCAAAGGCAGATATAGATAACCTTGACGAGTTGCTTGAGGAGGAGAACTTGTACTTGAATATAGAGTTGAAGAAAAGCAATAAGCAGAGAAAAAGGCCTGCGGTTGTTTTTCTTCATAGTTCGTACAGTAACAAAGAATCCCTGCGTCCATTGCTAAAGGCGTATGCTTCTCGAGGATATATAGCAATTTCTGTTGATTCTCGTTACCATGGAGAACGTGCCACCAACACAACCACCTATATTGATGCACTTATTTCTGCATGGAAAACCGGTGAGACAATGCCATTCATATATGACACGGTGTGGGACTTGATTAAATTGACAGATTATCTAACACGGAGAAGAGATATAGACCCTTCTAGGATAGGAATCAATGGAATATCACTTGGAGGAATCCATGCATGGTTTGCTGCATTTGCTGATACTAGCTATGCTGTGGCTGTTCCGGTGATTGGTATTCAGGGATTTCGATGGGCCATAGACAACGATGAGTTTCAGGGTCGAGTTGAGACTATAAAGCCTCTTTTTGAGGTGGCTCGTGATGATTTGGGTAAAGCTGCTATTGACAAAGACGTGGTGGAGAAGGTGTGGGACCGAATTGCTCCTGGTTTTGCTTCCCAATTTGATTCACCCTATTCAATTCCAGCTATTGCACCACGTCCGTTGCTTATTCTTAATGGTGCGGAAGATCCTCGGTGTCCTCTTGGAGGCTTGGAAATTCCAAGAGCAAAGGCAACCAAGGCATACAGAAAGTTTCATTGTTTAGATAATTTCAGGTTTATTGCAGAAGCTGGAATCGGACACCAAGTAACGAGATTTATGATAAAAGAATCAGCTGATTGGTTTGATAGGTTCTTAAACCCTTAG
>Glyma04g08651.1 sequence type=predicted peptide gene model=Glyma04g08651 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CYGGPYSHYKIQNKLAGKEAIEEVQSQSKLRSEFLQVLRTRRPAQESTPKADIDNLDELLEEENLYLNIELKKSNKQRKRPAVVFLHSSYSNKESLRPLLKAYASRGYIAISVDSRYHGERATNTTTYIDALISAWKTGETMPFIYDTVWDLIKLTDYLTRRRDIDPSRIGINGISLGGIHAWFAAFADTSYAVAVPVIGIQGFRWAIDNDEFQGRVETIKPLFEVARDDLGKAAIDKDVVEKVWDRIAPGFASQFDSPYSIPAIAPRPLLILNGAEDPRCPLGGLEIPRAKATKAYRKFHCLDNFRFIAEAGIGHQVTRFMIKESADWFDRFLNP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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