Glyma04g08620 - SoyBase

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Report for Sequence Feature Glyma04g08620

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6754469
stop:	6759035
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25770	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr5:8969308-8971389 REVERSE LENGTH=360	SoyBase	E_val: 2.00E-170	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010260	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ senescence	SoyBase	N/A	ISS
GO:0046482	GO-bp	Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR17630	Panther	DIENELACTONE HYDROLASE	JGI		ISS
PTHR17630:SF20	Panther	CARBOXYMETHYLENEBUTENOLIDASE	JGI		ISS
PF00326	PFAM	Prolyl oligopeptidase family	JGI		ISS
UniRef100_B9RS30	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RS30_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JUT3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUT3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08620

Paralog	Evidence	Comments
Glyma06g08740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g081400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08620

Limit To All Plant Sequences

>Glyma04g08620.1   sequence type=CDS   gene model=Glyma04g08620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAAAAGAAGCCGTTGAAGAAGCTCAGAGCAAGTTCCGATCAGAGTTCCTTCAAGTCCTGCGTAGTAGGCGACCCGCTCAAGTTCCACTAACAGTCGAACTCGCGAAGCCAGTTGCGAATCCTTTGCATCAGGACTCTCCTCCATCGATCGAAGGGATCGAGATAATGGAGTCGTGTCCGAAGGCTGATATAGAGAACCTTGAAGACTTGCTCGAGGAGGAGAATCTCTACTTGAATACAGAGGAAGGAGAGCAAGGACGGTTGCCTTTGTTGGTTTTGAAGTTGAAGGAAAGCGATAAGCAGAGAAAAAGGCCTGCGGTTGTTTTTCTTCACAGTACGAATAAATACAAAGAAGCCGTGCGTCCATTGCTTAAGGCATATGCTTCGCGAGGATATATAGCAATTTCTGTTGATTCTCGTTACCATGGAGAACGTGCTACCAGCGCAACCGCCTATCGCGATGCACTTATTTCTGCATGGAAAACCGGTGAGACGATGCCATTCATATTTGACACGGTCTGGGACTTGATTAAATTGGCAGATTATCTAACACACAGAGAGGATGTAGACCCTTCTAGGATAGGAATCACTGGAATATCACTTGGAGGAATGCATGCATGGTTTGCTGCAGTTGCTGATACTCGCTATGCTGTGGTTGCTCCTCTGATTGGCGTTCAGGGATTTCGATGGGCCATGGACAATGATAAATGGCAGGCTCGAGTTGATAGTATAAAGCCTCTTTTTGAGGTGGCTCGTGATGATTTGGGTAAAGGTGCTATTGACAAAGAAGTGGTGGAGAAGGTGTGGGACCGAATTGCTCCCGGTTTAGCTTCCCAATTTGATTCACCTTATTCAGTTCCAACTATCGCACCACGTCCTTTGCTTATTGTTAATGGTGCGGAAGATCCTCGGTGTCCCATTGCAGGCTTGGAAATTCCAAGGGCAAAGGCAAGCTGGGCATATGGAGAGTTTGACTGTTTAGATAATTTCAAGATTATTACAGAACCTGGAGTTGGACACCAATTAACGAGGCTTCAGGTGAAAGAATCATCTTATTGGTTTGACAGGTTCTTGAAACCTTAG

Predicted protein sequences of Glyma04g08620

Limit To All Plant Sequences

>Glyma04g08620.1   sequence type=predicted peptide   gene model=Glyma04g08620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEKEAVEEAQSKFRSEFLQVLRSRRPAQVPLTVELAKPVANPLHQDSPPSIEGIEIMESCPKADIENLEDLLEEENLYLNTEEGEQGRLPLLVLKLKESDKQRKRPAVVFLHSTNKYKEAVRPLLKAYASRGYIAISVDSRYHGERATSATAYRDALISAWKTGETMPFIFDTVWDLIKLADYLTHREDVDPSRIGITGISLGGMHAWFAAVADTRYAVVAPLIGVQGFRWAMDNDKWQARVDSIKPLFEVARDDLGKGAIDKEVVEKVWDRIAPGLASQFDSPYSVPTIAPRPLLIVNGAEDPRCPIAGLEIPRAKASWAYGEFDCLDNFKIITEPGVGHQLTRLQVKESSYWFDRFLKP*

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