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Report for Sequence Feature Glyma04g08606

Feature Type:gene_model
Chromosome:Gm04
Start:6747364
stop:6751468
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08606
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G25760AT Annotation by Michelle Graham. TAIR10: peroxin4 | chr5:8967983-8969173 FORWARD LENGTH=157 SoyBaseE_val: 9.00E-111ISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0006661GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process SoyBaseN/AISS
GO:0007031GO-bp Annotation by Michelle Graham. GO Biological Process: peroxisome organization SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016881GO-mf Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity SoyBaseN/AISS
KOG0417 KOG Ubiquitin-protein ligase JGI ISS
PTHR24067Panther UBIQUITIN-CONJUGATING ENZYME E2 JGI ISS
PTHR24067:SF25Panther JGI ISS
PF00179PFAM Ubiquitin-conjugating enzyme JGI ISS
UniRef100_F8RWT3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein binding/ubiquitin-protein ligase 4 n=1 Tax=Hevea brasiliensis RepID=F8RWT3_HEVBR SoyBaseE_val: 2.00E-111ISS
UniRef100_I1JUT1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1JUT1_SOYBN SoyBaseE_val: 3.00E-114ISS

Expression Patterns of Glyma04g08606
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g08606 not represented in the dataset
Glyma04g08606 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08606
ParalogEvidenceComments
Glyma06g08720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08606 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g081200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g08606
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g08606
>Glyma04g08606.2   sequence type=transcript   gene model=Glyma04g08606   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGGGGGGAAAAAAACGCGGGTGCCAACTGTGCTATAGAGACTATCATCTTCTTGGTGGGTCCACTGTTCTAGGGTTTGCACAGTTCCATTTTACTTTTCATTTCCGATCCATAATTGTCCCAACGCGATACACCAATTCTTCCTTCCTTTCATCTCGTGAAATCCAAAGAGTTGCGACACGTTAAATTGTTTTCCAGGTTGCGCATATCCAGCATGCAGGCATCGCGGGCAAGGCTGTTCAAGGAGTACAAAGAGGTGCAGCGGGAAAAGGCTGTTGATCTTGATATTCAACTAGTTTGTGATGATTCAAACATTTTTAAATGGACCGCTCTTATCAAGGGACCCTCTGAGACTCCTTATGAGGGTGGTGTGTTCCAGCTTGCGTTTTCTGTTCCGGAGCAGTATCCTCTACAGCCACCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCAAATGTGCATTTTAAGACTGGGGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCCGCTTGGACACTTCAATCTGTCTGTAGGGCTATAATTGCGTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGCAATCTTCTGCGTTCAGGGGATGTTAGAGGGTACCAATCCATGGCAAGAATGTACACGAGACTCGCGGCTATGCCAAAGAAAGGCTGAATGATTTTAGATAACTTGTTTCCTATGTTAGTCTAGGCAACAAGTTAGCAGTAGATACATCAGTTCTGTGTTCCAATCTTAATTTGTTTGAAATGTATACATTTTAAGACATGATATTAATTGTTTGATGATTTGTATTAAAGTAGTGACTTGTACACAATGTACAAAGTGTTGGTGTGACCTCGCATATCTGGATTCGTGCCAGAATGATCTCAAATATTCAAATAATCCTTGATTGCTTCAGTTTTATGAAATCCATATCTTGAGGTTGCATTC
Coding sequences of Glyma04g08606
>Glyma04g08606.1   sequence type=CDS   gene model=Glyma04g08606   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCATCGCGGGCAAGGCTGTTCAAGGAGTACAAAGAGGTGCAGCGGGAAAAGGCTGTTGATCTTGATATTCAACTAGTTTGTGATGATTCAAACATTTTTAAATGGACCGCTCTTATCAAGGGACCCTCTGAGACTCCTTATGAGGGTGGTGTGTTCCAGCTTGCGTTTTCTGTTCCGGAGCAGTATCCTCTACAGCCACCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCAAATGTGCATTTTAAGACTGGGGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCCGCTTGGACACTTCAATCTGTCTGTAGGGCTATAATTGCGTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGCAATCTTCTGCGTTCAGGGGATGTTAGAGGGTACCAATCCATGGCAAGAATGTACACGAGACTCGCGGCTATGCCAAAGAAAGGCTGA

>Glyma04g08606.2   sequence type=CDS   gene model=Glyma04g08606   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCATCGCGGGCAAGGCTGTTCAAGGAGTACAAAGAGGTGCAGCGGGAAAAGGCTGTTGATCTTGATATTCAACTAGTTTGTGATGATTCAAACATTTTTAAATGGACCGCTCTTATCAAGGGACCCTCTGAGACTCCTTATGAGGGTGGTGTGTTCCAGCTTGCGTTTTCTGTTCCGGAGCAGTATCCTCTACAGCCACCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCAAATGTGCATTTTAAGACTGGGGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCCGCTTGGACACTTCAATCTGTCTGTAGGGCTATAATTGCGTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGCAATCTTCTGCGTTCAGGGGATGTTAGAGGGTACCAATCCATGGCAAGAATGTACACGAGACTCGCGGCTATGCCAAAGAAAGGCTGA
Predicted protein sequences of Glyma04g08606
>Glyma04g08606.1   sequence type=predicted peptide   gene model=Glyma04g08606   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQASRARLFKEYKEVQREKAVDLDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG*

>Glyma04g08606.2   sequence type=predicted peptide   gene model=Glyma04g08606   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQASRARLFKEYKEVQREKAVDLDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG*






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