Glyma04g08550 - SoyBase

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Report for Sequence Feature Glyma04g08550

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6699091
stop:	6705918
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32730	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like protein \| chr4:15791039-15795643 FORWARD LENGTH=995	SoyBase	E_val: 0	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0003713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7ZWL9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C-myb-like transcription factor n=1 Tax=Medicago truncatula RepID=G7ZWL9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JUS5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUS5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08550

Paralog	Evidence	Comments
Glyma06g08660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g080600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08550

Limit To All Plant Sequences

>Glyma04g08550.1   sequence type=CDS   gene model=Glyma04g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTGACCAGACAATCCTTGCTGCATCAGAAGGGGTGATAGAAGGTGTTCAGAAAATTAGATCTCTGAATGGGAGGACTACTGGCCCTACAAGGCGCTCTACAAAAGGACAATGGACACCTGAAGAGGACGAGATTTTGCGGAAGGCTGTTCAGCGTTTCAAAGGAAAGAACTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTCGTCAAAGGTCCATGGTCTAAAGAGGAGGATGAAATAATTATTGATTTGGTGAATAGATATGGACCTAAAAAGTGGTCTACTATCGCACAACACTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTACTATAAATAAGGAAGCATGGACGCAAGAAGAGGAGTTGGCTCTTATACGCGCACATCAGATTTATGGGAACAGATGGGCAGAATTAGCGAAGTTATTGCCTGGAAGGACAGACAATTCTATAAAAAACCATTGGAATAGTTCTGTAAAAAAAAAAATGGATTCTTACTTGGCATCGGGCTTGCTTACTCAGTTACAAAATGTACCACTTGTTGGAAATCCGAATCAACCTATTGCTTCCATCTCTTCGAGGTTGCAGCAGAGTGGAGATGATAATGGTCCTAGGGGGGCTGAAGGGGAGGAAGTTTCACAGAGTAGCCAGGAGTCAGCTAAAGCTGGTCACTTTTCGTCAGCCAGAGAGATGAGGAGTGTTGTTTTACAAACTGGAGAGGAATACAAACCAAATGAAAAACCTAGTCAAGCATCCTGTTCAGAGCCATATTACGTGTCTCTGGATGAAGTAACTGCATCCCTTCAAGACATGGCTGGCCAAGGGATTTGCACTTCTCAATTCATTGAACAGAAATATTCACACAAACCTAGAAACTCCACAAACGGGGACTGCCAGCTTGATTTACTTGACTTGACCCATATTTCCTCAATGGACTTTGGGCCGGAATCATCACAGTTGCAAAATGATAGGGTAGTTCCTGGTGAAAGTCACGACATGGTGAATATTCCGTTTCAGACTTCGATGGGGTTAGGTGTTGCAACGACCATGGGATCTATATCTGTTAAACCAGAACACATATTGATGTCTGATGATGAATGTTGCAGAATCCTAATTTCAGAAGCAATAGGTGATGAATGCTTTTCTTCTGGAGATTATAATAAAGGTGTTAACATGGTTAACTTGTCAGGATGCACCTCATTTCTTTGTCAGTCATTACCATCTGTCCAATCAGTAGTTTCTTCTACTGGTGATAGGTTGACGTATACGGTCGAACCCAATCAGTTGGTTGGGTCTGAGGATCAGCAGTTTGTCTCCAGAACACAGGACAACATAATTTATGCCAATGACTTGTCCAGTTCTCCTTGTATCCATAGGATAGACAGCACAGAAATGCAAGAGCCATCAGATGTTGTGAAAGATGATTCAAAATTGGTCCCTGTAAATAGTTTTGGCTGTGGATCAGACGCTAAGCAAACTTCCTATCCAACGGATGAAAAGCCAAATGTGCCTACAGAACAAGAGGACACAGGTGCTCTATGTTATGAACCTCCCCGCTTTCCAAGCTTGGACATTCCTTTCTTAAGCTGTGATCTTATACAATCTGGAGGTGATATGCAGCAGGAATTCAGTCCCCTAGGTATCCGCCAATTTATGATGTCTTCTATGAACATGAACCTAACTCCTTTTAGATTATGGGACTCACCTTCTCGTGATGATAGTCCAGATGCTCTGTTAAAAAGTGCAGCTAAAACCTTCACAGGTACACCATCTATATTAAAGAAACGAAACCGAGACCTTTTATCTCCACTATCAGATAAAAGAATTGACAAGAGACTTGAGATTGAAATGACATCAACCTTGATAAAAAACTTTTCCCGATTGGATGTCATGTTTGACGACAATGAAACTCCGGTAGCAGATTTGCTTCCTGCATCTTCAATGCAAAAGAGGGACTCTGGTACCTCTGTTGAAGGTGATAAAGGGAGTTGTCGACAAGATTTAGTTAAAGTGGAACGAGCAGAGGATAAAAAGAAGTCTGTAATTTTGGACGACAAAAAATCAGAAGACGATTCGGGTGGTAATAATTCTCAGGATAAAGTTAAGCAGCAACCTCTTGATGTTGATTCTGAGATAAAGAATGATGCTAGTGCTGCTGCTGAGATTGTGCAACAACCATCTGAAATTTTGGTTGAACATGATATGAATGATCTGTTACTGTATTCACCTGATCAGGTTAATTTGAAATCAGAAAAAGTTCTTAGTTTAAGTGCTAGAACTAAAAAAAATCCATGCTCAAGGATTAACTCACCATCTGTTTGGGTAAAGGAGCATGAAAGACTTTCAGTTGCTGTTACTTGTGTACAGTCTATCAGTTCATCAGGCTCAGGGGAGAATTCGGGTGATCACACTGGAAACGATGGTGGTCTTGAAACATGTAACATATTTGGTGGAACACCTTTTAGGAAAAGCATTGAATCGCCTTCAGCATGGAAATCTCCTTGGCTCATTAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATCGAGGATTTTGGGTATTTCATGAGCCCTTGTGACAGAAGCTATGATGCAATCGGGTTGATGAAACAGATCAGTGAACAAACTGCTGCTCAATATGCCAGTGCTCAAGAGATTCTAGGAAATGAGACTCCCAAGGCATTACCAAAAGAGGCGTCCAGAAATGACAGGGATGGAGACCAGGAAAATATCGATGCTCATGATCAGCATGGGAACCATTCTCAGTTGGCTTCAAGTGCTTTGGTGGAGCGACGTGTACTTGACTTCAGCGAATGTGGAACTCCGGTCAGAGGTGATAGCAGCAGCAAATCCTCAGCTATGAGCTTCTCAAGCCCTTCTTCGTATTTGTTGAAGGGCTGTAGATAG

Predicted protein sequences of Glyma04g08550

Limit To All Plant Sequences

>Glyma04g08550.1   sequence type=predicted peptide   gene model=Glyma04g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGDQTILAASEGVIEGVQKIRSLNGRTTGPTRRSTKGQWTPEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNRYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPTINKEAWTQEEELALIRAHQIYGNRWAELAKLLPGRTDNSIKNHWNSSVKKKMDSYLASGLLTQLQNVPLVGNPNQPIASISSRLQQSGDDNGPRGAEGEEVSQSSQESAKAGHFSSAREMRSVVLQTGEEYKPNEKPSQASCSEPYYVSLDEVTASLQDMAGQGICTSQFIEQKYSHKPRNSTNGDCQLDLLDLTHISSMDFGPESSQLQNDRVVPGESHDMVNIPFQTSMGLGVATTMGSISVKPEHILMSDDECCRILISEAIGDECFSSGDYNKGVNMVNLSGCTSFLCQSLPSVQSVVSSTGDRLTYTVEPNQLVGSEDQQFVSRTQDNIIYANDLSSSPCIHRIDSTEMQEPSDVVKDDSKLVPVNSFGCGSDAKQTSYPTDEKPNVPTEQEDTGALCYEPPRFPSLDIPFLSCDLIQSGGDMQQEFSPLGIRQFMMSSMNMNLTPFRLWDSPSRDDSPDALLKSAAKTFTGTPSILKKRNRDLLSPLSDKRIDKRLEIEMTSTLIKNFSRLDVMFDDNETPVADLLPASSMQKRDSGTSVEGDKGSCRQDLVKVERAEDKKKSVILDDKKSEDDSGGNNSQDKVKQQPLDVDSEIKNDASAAAEIVQQPSEILVEHDMNDLLLYSPDQVNLKSEKVLSLSARTKKNPCSRINSPSVWVKEHERLSVAVTCVQSISSSGSGENSGDHTGNDGGLETCNIFGGTPFRKSIESPSAWKSPWLINTFLSSPRIDTEITIEDFGYFMSPCDRSYDAIGLMKQISEQTAAQYASAQEILGNETPKALPKEASRNDRDGDQENIDAHDQHGNHSQLASSALVERRVLDFSECGTPVRGDSSSKSSAMSFSSPSSYLLKGCR*

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