Glyma04g08480 - SoyBase

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Report for Sequence Feature Glyma04g08480

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6649655
stop:	6659287
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11490	AT	Annotation by Michelle Graham. TAIR10: adaptin family protein \| chr5:3671964-3676144 FORWARD LENGTH=841	SoyBase	E_val: 0	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
GO:0043424	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding	SoyBase	N/A	ISS
KOG1061	KOG	Vesicle coat complex AP-1/AP-2/AP-4, beta subunit	JGI		ISS
PTHR11134	Panther	ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT	JGI		ISS
PTHR11134:SF4	Panther	ADAPTER-RELATED PROTEIN COMPLEX 4, BETA SUBUNIT	JGI		ISS
PF01602	PFAM	Adaptin N terminal region	JGI		ISS
PF09066	PFAM	Beta2-adaptin appendage, C-terminal sub-domain	JGI		ISS
UniRef100_B9RS58	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP-2 complex subunit beta-1, putative n=1 Tax=Ricinus communis RepID=B9RS58_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JUR7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUR7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08480

Paralog	Evidence	Comments
Glyma06g08586	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g080000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08480

Limit To All Plant Sequences

>Glyma04g08480.1   sequence type=CDS   gene model=Glyma04g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCACCGCCACCGCAGTCTCATCGATCGCCCTCACCGTCGCAACCGTCAGGGAAGAGTGAAGTCTCCGATCTGAAATCGCAGCTCCGGCAGCTAGCTGGGAGCCGAGCTCCGGGCGCTGATGATTCTAAGAGGGATCTCTTCAAGAAGGTGATTTCCAACATGACTATAGGTATTGATGTCTCATCTCTCTTTGGCGAGATGGTAATGTGCTCTGCAACGTCAGATATTGTTCTGAAAAAAATGTGCTACCTATATGTTGGGAACTATGCTAAGGTCAATCCTGATCTTGCGCTTTTGACGATTAATTTTCTGCAAAGAGATTGCAAGGATGAGGATCCAATGATTCGGGGACTAGCATTGAGGAGTTTGTGTTCGCTCCGGGTGGCAAACTTGGTGGAGTATTTGGTTGGGCCATTAGGATCTGGATTGAAGGACAATAATAGTTATGTGAGGATGGTGGCAGTTATTGGGGTTTTGAAACTATATCATATATCAGCTTCCACCTGTATTGATGCTGATTTTCCAGCAACACTGAAGCATTTGTTGCTTAATGACCCTGATGCTCAGGTAGTTGCAAATTGTTTGTCTGCTTTACAAGAAATTTGGACCTTAGAGTCATCCACATCAGAGGAAGCAGCCAGGGAGAGAGAAACTCTACTTAGCAAGCCAGTTGTATATTACCTTTTGAATCGCATTAAGGAATTTAGTGAATGGGCTCAGTGTCTTGTGCTGGAATTGGTGTCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTTCTTGAAGATAGGCTCCAGCATGCAAATGGTGCTGTTGTCTTGGCAACTATTAAAGTATTTCTGCAGTTGACTTTGTCTATGGCTGATGTGCATCAGCAGGTATATGAGCGCATCAAAGCCCCTCTCTTAACTCAAGTGAGCTCAGGAAGTCCAGAACAATCTTATGCAGTTTTAAGTCACCTGCATATTTTGGTCATGCGTGCACCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCATATGTTAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAACTAACACCTATGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGAGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGGTGCTTGTGAAAGATCTGCTAAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGAAATATCAGTAGTAAAAATGTCCAAGAACCCAAGGCTAAGGCAGCTCTTATATGGATGTTGGGGGAATATTCTCAGGACATGCATGATGCTCCATATGTCTTGGAGAGTTTAGTTGAAAACTGGGATGAGGAGCATTCTGCTGAGGTTCGCTTACATCTTCTTACTGCAGTTATGAAGTGTTTCTTTAAGCGACCACCTGAAACTCAAAAAGCATTAGGAGCTGCATTGGCTGCTGGGCTTGCTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTGCAATACAATGTATCAGTGGCAGAGAGTGTGGTTAACCCTCCAAAGCAAGCAGTTTCAGTATTTGCTGATACTCAGAGCAGTGAAATCAAAGATCGCATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAGCCTTCTTATATGTTCACTGATAAGGAACACCGAGGGACATTTGAGTTTGCAGATGAACTTGGAAATCTATCTATTAGTGCAGAATCTTCAGATTCTGTTGTTCCAGCTGAGAGAGTGGAAGCAAATGACAAGGATCTGCTTCTAAGTACTTCAGAAAAAGATGAAGGAAGAGATCCTGGTAGCAATGGTTCTGTCTATAATGCTCCTTCCTATAATGGTTCTTCTGCCCCTTCTACAACTTCACAACCACTTGCAGATTTGTCATTTCCAAGTACTGGCATATCCGGTCAAGCTCCTGCTTCTAGCTTGGCAATTGATGATCTACTTGGTTTAGATTTTCCAGTTGGGACTGCAGTCACACCTTCACCTCCTCCATTGAACCTAAACCCAAAAGCTGTACTGGATCCTGGTACATTTCAGCAGAAATGGCGTCAACTGCCAATATCCTTATCTGAGGAATATTCTCTAAGTCCTCAAGGAGTTGCATCGTTGACAACTCCTCATGCACTTCTGCGGCACATGCAAAGTCATTCAATACAATGCATTGCATCCGGTGGTCAGTCTCCCAACTTCAAGTTCTTTTTCTTTGCTCAGAAAGCAGAAGCAGCATCAATGTATCTTGTAGAGTGTATAATCAACACATCGTCAGCCAAGTCACAGATTAAAATAAAAGCTGATGACCAAAGTTCATCCCAGGCATTCTCTACTTTATTCCAATCAGCCTTGTCCAAATTTGGTTTACCTTGA

Predicted protein sequences of Glyma04g08480

Limit To All Plant Sequences

>Glyma04g08480.1   sequence type=predicted peptide   gene model=Glyma04g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPPPQSHRSPSPSQPSGKSEVSDLKSQLRQLAGSRAPGADDSKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRMVAVIGVLKLYHISASTCIDADFPATLKHLLLNDPDAQVVANCLSALQEIWTLESSTSEEAARERETLLSKPVVYYLLNRIKEFSEWAQCLVLELVSKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATIKVFLQLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAVLSHLHILVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANETNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTFEFADELGNLSISAESSDSVVPAERVEANDKDLLLSTSEKDEGRDPGSNGSVYNAPSYNGSSAPSTTSQPLADLSFPSTGISGQAPASSLAIDDLLGLDFPVGTAVTPSPPPLNLNPKAVLDPGTFQQKWRQLPISLSEEYSLSPQGVASLTTPHALLRHMQSHSIQCIASGGQSPNFKFFFFAQKAEAASMYLVECIINTSSAKSQIKIKADDQSSSQAFSTLFQSALSKFGLP*

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