Glyma04g08470 - SoyBase

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Report for Sequence Feature Glyma04g08470

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6642939
stop:	6647357
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11480	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:3669350-3671471 REVERSE LENGTH=318	SoyBase	E_val: 1.00E-145	ISS
GO:0000917	GO-bp	Annotation by Michelle Graham. GO Biological Process: barrier septum assembly	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006399	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG2486	KOG	Predicted GTPase	JGI		ISS
PTHR11649	Panther	MSS1/TRME-RELATED GTP-BINDING PROTEIN	JGI		ISS
PF01926	PFAM	GTPase of unknown function	JGI		ISS
UniRef100_G7J3E8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis GTP-binding protein YsxC n=1 Tax=Medicago truncatula RepID=G7J3E8_MEDTR	SoyBase	E_val: 2.00E-150	ISS
UniRef100_I1JUR6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUR6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08470

Paralog	Evidence	Comments
Glyma06g08580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g079900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g08470

Limit To All Plant Sequences

>Glyma04g08470.3   sequence type=transcript   gene model=Glyma04g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCTCAAAGTTTTTCATCGTCCGAAAAAAACATAATAGTTGATCCCCATCTTTTTATGAATAGTACTTATGCTGTTTGATTGCAAAAATCCCCAACCCTCTTTGGCGTGGCTAACAAAACGACGTTTTGAGTAACGCGGCAGCGTGTGCCGGGAGTGTCGTTTAATCGCCCGCCAAGACATTTTCCTTTTTCATTTCATCGCTGAGTCCCTAAAGTGCAGTGAAATGGTCCTTCTTCACCTCCCAAGGTTCCCTCTCTACCTCGTTACCTTATCTCCCTCCCTCACTCTCCGAGCCTACTCCAAAACCACCCTCTTACGGCCACCCAAATCCACTCTCACCGCCTCAGAACCCGTAAGTGTTAACCCTTCCCCAACAGAGCTATCCCTCGAGAAGCTCTTCGTTCCGCCGGAGACCACCGTGTCCCTCGAAAGTTCCAGAGTCTTGAACGGTTCCAACATTCTGTTGAGTAACTACGCCAATGATGCTCTGGTATTGCAGGCCGAGTTTGTGAAAAGCAGCGTGAAGACTGAGGATTGTCCCTCCGATGGACTTGCTGAGTTCGCTCTCGTTGGCCGCTCCAACGTCGGAAAATCCTCGCTCCTCAACTCCCTCGTGCGCCGCAAGAAGCTCGCCTTAACTTCGAAGAAACCTGGCAAAACGCAATGTATAAACCATTTTCGGATTAATAATAGCTGGTACCTGGTTGATTTGCCTGGATATGGGTATGCATCTGCACCGCATGAACTTAGGATGGATTGGGAAAAATTCACCAAAGACTATTTCCTTAACCGCTCAACGTTAGTTTCAGTATTCCTTCTAATAGATGCTAGCATTCCTGCTAAACAAATTGATCTTGACTATGCCAGTTGGTTGGGTCAGAATCAGATCCCAATGACATTAATCTTCACCAAATGTGACAAGCGGAAAAAGAAAAAGAATGGAGGCAAAAGACCAGAAGAAAATGTTAATGATTTTCAGGATTTGATTCGAGGTTTCTTCCAATCAGTGCCTCCATGGATCATGACCAGTAGTGTTACCAATCAGGGTCGTGATGAGATACTCCTCCATATGGCCCAGCTACGGAACTACTGGCTCAAGCACTAGTTCTGAGAAACATGATATCGTTAGAGCAGATACGCATTTCCAGATAGACTTGCTTGATTACCAGCTAATATGGTTATCAATTTATCTATTTTCCTGGTGTGCCTTCTCTGTATTGCCCAAGTACCTACAAGGCCTAAAGCTAGTGACATGAAAGCTGGATAAAGAAAACTATTTAGAACAAAGCTTGATACTGTACAACACCATGCCTGCGTGAGGTTCTCTACTCCCAGCCCTGTACGGTTGTTCTAATGAAGTTTGTTTTGGATGTTCACAAATGGTTATTATCACCTGTAAATTAGTAATGATATTTTCATTCAAATAATTGGATACTTCCAAAGTACTATTGTCGTTGATTTTAAAGAACTTATATGTGAGATTTTTGCCTCTCCCCCGAAGTGACACTTCATGGAAAACCATCACTTTACATGAGCGTTCATGATGCTCTTACTTTTAGCAGGCCACTGCATATTCATTTTTTTCCGGCTGTAGATGAGCTGAAGAATCAAAATACATGCAAGGATGCGGCAGGAAAACAGCTCCCATATGACTCGAGCATGCTGAACAGCGATGACACTGAAGTGTTACTAGGCTCCTTAAAGGAATTGTTAATGAAGTTACCATCAATAACGATATCTACTACACTTGTGTGCACTGTAATATGTAATTGCCTCTGGTGATGGAATTATTGGTGCACTTCACTATGTTCCAACCAACCTATTGTAATATCTCTTCGTTGATGCATTTATTAGGATTAGACAAGTTCTACCAACTAATCTTGTTATCAACTAATCCTGTTA

Coding sequences of Glyma04g08470

Limit To All Plant Sequences

>Glyma04g08470.2   sequence type=CDS   gene model=Glyma04g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCCTTCTTCACCTCCCAAGGTTCCCTCTCTACCTCGTTACCTTATCTCCCTCCCTCACTCTCCGAGCCTACTCCAAAACCACCCTCTTACGGCCACCCAAATCCACTCTCACCGCCTCAGAACCCGTAAGTGTTAACCCTTCCCCAACAGAGCTATCCCTCGAGAAGCTCTTCGTTCCGCCGGAGACCACCGTGTCCCTCGAAAGTTCCAGAGTCTTGAACGGTTCCAACATTCTGTTGAGTAACTACGCCAATGATGCTCTGGTATTGCAGGCCGAGTTTGTGAAAAGCAGCGTGAAGACTGAGGATTGTCCCTCCGATGGACTTGCTGAGTTCGCTCTCGTTGGCCGCTCCAACGTCGGAAAATCCTCGCTCCTCAACTCCCTCGTGCGCCGCAAGAAGCTCGCCTTAACTTCGAAGAAACCTGGCAAAACGCAATGTATAAACCATTTTCGGATTAATAATAGCTGGTACCTGGTTGATTTGCCTGGATATGGGTATGCATCTGCACCGCATGAACTTAGGATGGATTGGGAAAAATTCACCAAAGACTATTTCCTTAACCGCTCAACGTTAGTTTCAGTATTCCTTCTAATAGATGCTAGCATTCCTGCTAAACAAATTGATCTTGACTATGCCAGTTGGTTGGGTCAGAATCAGATCCCAATGACATTAATCTTCACCAAATGTGACAAGCGGAAAAAGAAAAAGAATGGAGGCAAAAGACCAGAAGAAAATGTTAATGATTTTCAGGATTTGATTCGAGGTTTCTTCCAATCAGTGCCTCCATGGATCATGACCAGTAGTGTTACCAATCAGGGTCGTGATGAGATACTCCTCCATATGGCCCAGCTACGGAACTACTGGCTCAAGCACTAG

>Glyma04g08470.3   sequence type=CDS   gene model=Glyma04g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCCTTCTTCACCTCCCAAGGTTCCCTCTCTACCTCGTTACCTTATCTCCCTCCCTCACTCTCCGAGCCTACTCCAAAACCACCCTCTTACGGCCACCCAAATCCACTCTCACCGCCTCAGAACCCGTAAGTGTTAACCCTTCCCCAACAGAGCTATCCCTCGAGAAGCTCTTCGTTCCGCCGGAGACCACCGTGTCCCTCGAAAGTTCCAGAGTCTTGAACGGTTCCAACATTCTGTTGAGTAACTACGCCAATGATGCTCTGGTATTGCAGGCCGAGTTTGTGAAAAGCAGCGTGAAGACTGAGGATTGTCCCTCCGATGGACTTGCTGAGTTCGCTCTCGTTGGCCGCTCCAACGTCGGAAAATCCTCGCTCCTCAACTCCCTCGTGCGCCGCAAGAAGCTCGCCTTAACTTCGAAGAAACCTGGCAAAACGCAATGTATAAACCATTTTCGGATTAATAATAGCTGGTACCTGGTTGATTTGCCTGGATATGGGTATGCATCTGCACCGCATGAACTTAGGATGGATTGGGAAAAATTCACCAAAGACTATTTCCTTAACCGCTCAACGTTAGTTTCAGTATTCCTTCTAATAGATGCTAGCATTCCTGCTAAACAAATTGATCTTGACTATGCCAGTTGGTTGGGTCAGAATCAGATCCCAATGACATTAATCTTCACCAAATGTGACAAGCGGAAAAAGAAAAAGAATGGAGGCAAAAGACCAGAAGAAAATGTTAATGATTTTCAGGATTTGATTCGAGGTTTCTTCCAATCAGTGCCTCCATGGATCATGACCAGTAGTGTTACCAATCAGGGTCGTGATGAGATACTCCTCCATATGGCCCAGCTACGGAACTACTGGCTCAAGCACTAG

Predicted protein sequences of Glyma04g08470

Limit To All Plant Sequences

>Glyma04g08470.2   sequence type=predicted peptide   gene model=Glyma04g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLLHLPRFPLYLVTLSPSLTLRAYSKTTLLRPPKSTLTASEPVSVNPSPTELSLEKLFVPPETTVSLESSRVLNGSNILLSNYANDALVLQAEFVKSSVKTEDCPSDGLAEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINHFRINNSWYLVDLPGYGYASAPHELRMDWEKFTKDYFLNRSTLVSVFLLIDASIPAKQIDLDYASWLGQNQIPMTLIFTKCDKRKKKKNGGKRPEENVNDFQDLIRGFFQSVPPWIMTSSVTNQGRDEILLHMAQLRNYWLKH*

>Glyma04g08470.3   sequence type=predicted peptide   gene model=Glyma04g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLLHLPRFPLYLVTLSPSLTLRAYSKTTLLRPPKSTLTASEPVSVNPSPTELSLEKLFVPPETTVSLESSRVLNGSNILLSNYANDALVLQAEFVKSSVKTEDCPSDGLAEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINHFRINNSWYLVDLPGYGYASAPHELRMDWEKFTKDYFLNRSTLVSVFLLIDASIPAKQIDLDYASWLGQNQIPMTLIFTKCDKRKKKKNGGKRPEENVNDFQDLIRGFFQSVPPWIMTSSVTNQGRDEILLHMAQLRNYWLKH*

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