Glyma04g08460 - SoyBase

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Report for Sequence Feature Glyma04g08460

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6626815
stop:	6638509
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G64880	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S5 family protein \| chr1:24105713-24108780 FORWARD LENGTH=515	SoyBase	E_val: 0	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG2646	KOG	Ribosomal protein S5	JGI		ISS
PTHR13718	Panther	RIBOSOMAL S SUBUNIT	JGI		ISS
PTHR13718:SF2	Panther	40S RIBOSOMAL PROTEIN S2	JGI		ISS
PF00333	PFAM	Ribosomal protein S5, N-terminal domain	JGI		ISS
PF03719	PFAM	Ribosomal protein S5, C-terminal domain	JGI		ISS
UniRef100_G7LE23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 30S ribosomal protein S5 n=1 Tax=Medicago truncatula RepID=G7LE23_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JUR5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUR5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08460

Paralog	Evidence	Comments
Glyma06g08570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g079800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g08460

Limit To All Plant Sequences

>Glyma04g08460.2   sequence type=transcript   gene model=Glyma04g08460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGGACTTGTTTAGTAGCATTAGTCTCAGACTCTCAGTGTCTCACTGCATATATGAATATACGAAATTACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCGTTAATCTGAATGGGTTACATCCACCATGGAAGAACCGGTCTCAGGCACATACTCAGATTCAGAACCGCCACCGGCGTGGTCTCAAACTCCGGCAGATCGCAATCGCGCGCTGCATTCCCCTCCCATTCCCCTATCCTCGGCAACGTGCTTTTTTTCTCAACAGGCGATAAATACCTCAACGAAATTACCGCAGAGGTGGAACGCGACAGGCGCAGGGAGCGAAACGAGCGTTTGCGCCTCGGCCTCGACACCGCCGACATCGACACGGAGTCGGAGCAGGACTACATGGGCGTGGGGCCCCTCATCGCGAAGCTCGAGAAGGAGATGCTCAAGGAATCCCCCGAGCTGAACCGCTACGAGGAGCCCACCGACTCCGACGACGACTCCGACGAGGAAACCAAGGACGAGGCGGACAAGAAGATGAGTGACTTCGAGAAGAAAAGAGACAAGCACACGGACCTGCTCAAGAACTTCATCGAAGCCGAAACCCTAGATGACGCGTTTAAGTGCATGACCAAAATAGACAACTTCGAAAACAAGCATTTCCGCCTCCGGTCCGAGTATAGGGTTATCGGCGAGCTCATGAATCGGCTTAAGGTCTCGACGGAGCTGAAGGACAAGTTTGTTTTGCAGAACAAACTTAATAGGGCGTTGAGGTTGGTGCGATGGAAGGAGGCTTATGATCCTGATAACCCTGCGAATTATGGTGTGATTCAGCGTGAGCAGCCGACGGCGGATGCGAAGGAAGAGGCTGAGTTCGAGAAGGAGAAGCAGAAGCAGATCGAGGAGGGAGATAATGCTGATGCTGATGATGATGATGAGCAGGAGTTTGATGACATGAAGGAGAAGGATAATGTACTGATGGCCAAACTTGAGGCTATTGATAGGAAGCTCGAGGAGAAGTTGGCGGAGCTCGAGTATACGTTTGGGAGGAAGGGGAAGGCGCTCGAGGAAGAGATCAAGGATCTTGCTGAGGAGAGAAATGAATTGACTGAGCAGAAAAGAAAGCCTCTTTACCGGAAGGGTTTTGATACAAGATTGATAGACATGAACCGAACTTGTAAAGTCACAAAGGGAGGACAAGTTGTGAAGTATACTGCTATGGTAGCTTGTGGCAACTATAATGGTGTTATTGGTTTTGCAAAAGCCAAAGGCCCTGCAGTCCCAGTTGCCCTTCAAAAGGCGTATGAGAAATGCTTCCAGAATTTGCATTATGTAGAGCGACATGAGGAGCATACAATTGCACATGCAGTACAAACGTCATATAAAAAGACCAAGGTTTATCTCTGGCCTGCTCCTACTACAACTGGCATGAAAGCCGGCAGATCAGTTGAAGCCATACTTCATTTAGCTGGTTTAAAGAATGTCAAGTCAAAGGTCATTGGTTCCAGAAATCCTCATAATACAGTTAAGGCTGTCTTCAAAGCACTAAATGCGATTGAAACGCCAAGGGATGTCCAAGAGAAGTTTGGCAGGACTGTGGTTGAGAAGTATCTGTTGTGATGGACATGGCAATGTGGTCAGTTCAGTTGCCGTTGGCGGTTGTCTTCCATTGGATCTCTTAATTTGTACTTTTTATTCACGTGCATTTACCAAGAATTGGAAGAGATTTTCCCGAATGCATTACAGGTGAACATTAGCTATGGAATTTTGGCTGTAACTTTTTGTTCGTAAACACAAAAGGAACAATAGTTTAGGTTAATGTTTGTTTTTCCTCACTTTTAATGAGGCATTCTACCCATACCCCTTTTAGCCGGATACAATTTACATTTACAATCTCTCAAACTCAAGCCTTGAAAAGGATAGTCAAAAGTTTGAGCACACAACTCAATGAATGATGTTTAGCAAAATAAGTGTTCCTTTGTCTACAGAGATATATAGATTGGAAACTTGGTTGAGTAGAAGTTGCAGATGATGTATTCACGGTTGCCTTTGGCTTTCTGCCTTGAAAATACACCCCTTTCATCTTTTGCAGTTCGAAAAAGGAATATAAAGAAACTTTCTGAACTCAAG

Coding sequences of Glyma04g08460

Limit To All Plant Sequences

>Glyma04g08460.1   sequence type=CDS   gene model=Glyma04g08460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTACATCCACCATGGAAGAACCGGTCTCAGGCACATACTCAGATTCAGAACCGCCACCGGCGTGGTCTCAAACTCCGGCAGATCGCAATCGCGCGCTGCATTCCCCTCCCATTCCCCTATCCTCGGCAACGTGCTTTTTTTCTCAACAGGCGATAAATACCTCAACGAAATTACCGCAGAGGTGGAACGCGACAGGCGCAGGGAGCGAAACGAGCGTTTGCGCCTCGGCCTCGACACCGCCGACATCGACACGGAGTCGGAGCAGGACTACATGGGCGTGGGGCCCCTCATCGCGAAGCTCGAGAAGGAGATGCTCAAGGAATCCCCCGAGCTGAACCGCTACGAGGAGCCCACCGACTCCGACGACGACTCCGACGAGGAAACCAAGGACGAGGCGGACAAGAAGATGAGTGACTTCGAGAAGAAAAGAGACAAGCACACGGACCTGCTCAAGAACTTCATCGAAGCCGAAACCCTAGATGACGCGTTTAAGTGCATGACCAAAATAGACAACTTCGAAAACAAGCATTTCCGCCTCCGGTCCGAGTATAGGGTTATCGGCGAGCTCATGAATCGGCTTAAGGTCTCGACGGAGCTGAAGGACAAGTTTGTTTTGCAGAACAAACTTAATAGGGCGTTGAGGTTGGTGCGATGGAAGGAGGCTTATGATCCTGATAACCCTGCGAATTATGGTGTGATTCAGCGTGAGCAGCCGACGGCGGATGCGAAGGAAGAGGCTGAGTTCGAGAAGGAGAAGCAGAAGCAGATCGAGGAGGGAGATAATGCTGATGCTGATGATGATGATGAGCAGGAGTTTGATGACATGAAGGAGAAGGATAATGTACTGATGGCCAAACTTGAGGCTATTGATAGGAAGCTCGAGGAGAAGTTGGCGGAGCTCGAGTATACGTTTGGGAGGAAGGGGAAGGCGCTCGAGGAAGAGATCAAGGATCTTGCTGAGGAGAGAAATGAATTGACTGAGCAGAAAAGAAAGCCTCTTTACCGGAAGGGTTTTGATACAAGATTGATAGACATGAACCGAACTTGTAAAGTCACAAAGGGAGGACAAGTTGTGAAGTATACTGCTATGGTAGCTTGTGGCAACTATAATGGTGTTATTGGTTTTGCAAAAGCCAAAGGCCCTGCAGTCCCAGTTGCCCTTCAAAAGGCGTATGAGAAATGCTTCCAGAATTTGCATTATGTAGAGCGACATGAGGAGCATACAATTGCACATGCAGTACAAACGTCATATAAAAAGACCAAGGTTTATCTCTGGCCTGCTCCTACTACAACTGGCATGAAAGCCGGCAGATCAGTTGAAGCCATACTTCATTTAGCTGGTTTAAAGAATGTCAAGTCAAAGGTCATTGGTTCCAGAAATCCTCATAATACAGTTAAGGCTGTCTTCAAAGCACTAAATGCGATTGAAACGCCAAGGGATGTCCAAGAGAAGTTTGGCAGGACTGTGGTTGAGAAGTATCTGTTGTGA

>Glyma04g08460.2   sequence type=CDS   gene model=Glyma04g08460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTACATCCACCATGGAAGAACCGGTCTCAGGCACATACTCAGATTCAGAACCGCCACCGGCGTGGTCTCAAACTCCGGCAGATCGCAATCGCGCGCTGCATTCCCCTCCCATTCCCCTATCCTCGGCAACGTGCTTTTTTTCTCAACAGGCGATAAATACCTCAACGAAATTACCGCAGAGGTGGAACGCGACAGGCGCAGGGAGCGAAACGAGCGTTTGCGCCTCGGCCTCGACACCGCCGACATCGACACGGAGTCGGAGCAGGACTACATGGGCGTGGGGCCCCTCATCGCGAAGCTCGAGAAGGAGATGCTCAAGGAATCCCCCGAGCTGAACCGCTACGAGGAGCCCACCGACTCCGACGACGACTCCGACGAGGAAACCAAGGACGAGGCGGACAAGAAGATGAGTGACTTCGAGAAGAAAAGAGACAAGCACACGGACCTGCTCAAGAACTTCATCGAAGCCGAAACCCTAGATGACGCGTTTAAGTGCATGACCAAAATAGACAACTTCGAAAACAAGCATTTCCGCCTCCGGTCCGAGTATAGGGTTATCGGCGAGCTCATGAATCGGCTTAAGGTCTCGACGGAGCTGAAGGACAAGTTTGTTTTGCAGAACAAACTTAATAGGGCGTTGAGGTTGGTGCGATGGAAGGAGGCTTATGATCCTGATAACCCTGCGAATTATGGTGTGATTCAGCGTGAGCAGCCGACGGCGGATGCGAAGGAAGAGGCTGAGTTCGAGAAGGAGAAGCAGAAGCAGATCGAGGAGGGAGATAATGCTGATGCTGATGATGATGATGAGCAGGAGTTTGATGACATGAAGGAGAAGGATAATGTACTGATGGCCAAACTTGAGGCTATTGATAGGAAGCTCGAGGAGAAGTTGGCGGAGCTCGAGTATACGTTTGGGAGGAAGGGGAAGGCGCTCGAGGAAGAGATCAAGGATCTTGCTGAGGAGAGAAATGAATTGACTGAGCAGAAAAGAAAGCCTCTTTACCGGAAGGGTTTTGATACAAGATTGATAGACATGAACCGAACTTGTAAAGTCACAAAGGGAGGACAAGTTGTGAAGTATACTGCTATGGTAGCTTGTGGCAACTATAATGGTGTTATTGGTTTTGCAAAAGCCAAAGGCCCTGCAGTCCCAGTTGCCCTTCAAAAGGCGTATGAGAAATGCTTCCAGAATTTGCATTATGTAGAGCGACATGAGGAGCATACAATTGCACATGCAGTACAAACGTCATATAAAAAGACCAAGGTTTATCTCTGGCCTGCTCCTACTACAACTGGCATGAAAGCCGGCAGATCAGTTGAAGCCATACTTCATTTAGCTGGTTTAAAGAATGTCAAGTCAAAGGTCATTGGTTCCAGAAATCCTCATAATACAGTTAAGGCTGTCTTCAAAGCACTAAATGCGATTGAAACGCCAAGGGATGTCCAAGAGAAGTTTGGCAGGACTGTGGTTGAGAAGTATCTGTTGTGA

Predicted protein sequences of Glyma04g08460

Limit To All Plant Sequences

>Glyma04g08460.1   sequence type=predicted peptide   gene model=Glyma04g08460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGYIHHGRTGLRHILRFRTATGVVSNSGRSQSRAAFPSHSPILGNVLFFSTGDKYLNEITAEVERDRRRERNERLRLGLDTADIDTESEQDYMGVGPLIAKLEKEMLKESPELNRYEEPTDSDDDSDEETKDEADKKMSDFEKKRDKHTDLLKNFIEAETLDDAFKCMTKIDNFENKHFRLRSEYRVIGELMNRLKVSTELKDKFVLQNKLNRALRLVRWKEAYDPDNPANYGVIQREQPTADAKEEAEFEKEKQKQIEEGDNADADDDDEQEFDDMKEKDNVLMAKLEAIDRKLEEKLAELEYTFGRKGKALEEEIKDLAEERNELTEQKRKPLYRKGFDTRLIDMNRTCKVTKGGQVVKYTAMVACGNYNGVIGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAVQTSYKKTKVYLWPAPTTTGMKAGRSVEAILHLAGLKNVKSKVIGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL*

>Glyma04g08460.2   sequence type=predicted peptide   gene model=Glyma04g08460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGYIHHGRTGLRHILRFRTATGVVSNSGRSQSRAAFPSHSPILGNVLFFSTGDKYLNEITAEVERDRRRERNERLRLGLDTADIDTESEQDYMGVGPLIAKLEKEMLKESPELNRYEEPTDSDDDSDEETKDEADKKMSDFEKKRDKHTDLLKNFIEAETLDDAFKCMTKIDNFENKHFRLRSEYRVIGELMNRLKVSTELKDKFVLQNKLNRALRLVRWKEAYDPDNPANYGVIQREQPTADAKEEAEFEKEKQKQIEEGDNADADDDDEQEFDDMKEKDNVLMAKLEAIDRKLEEKLAELEYTFGRKGKALEEEIKDLAEERNELTEQKRKPLYRKGFDTRLIDMNRTCKVTKGGQVVKYTAMVACGNYNGVIGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAVQTSYKKTKVYLWPAPTTTGMKAGRSVEAILHLAGLKNVKSKVIGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL*

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