Glyma04g08400 - SoyBase

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Report for Sequence Feature Glyma04g08400

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6563390
stop:	6567392
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25590	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF630 and DUF632) \| chr5:8906684-8909847 REVERSE LENGTH=775	SoyBase	E_val: 0	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0008356	GO-bp	Annotation by Michelle Graham. GO Biological Process: asymmetric cell division	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR21450	Panther	UNCHARACTERIZED	JGI		ISS
PF04782	PFAM	Protein of unknown function (DUF632)	JGI		ISS
PF04783	PFAM	Protein of unknown function (DUF630)	JGI		ISS
UniRef100_Q9C824	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP protein, putative; 48652-45869 n=1 Tax=Arabidopsis thaliana RepID=Q9C824_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339C68	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339C68 related cluster n=1 Tax=unknown RepID=UPI0002339C68	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08400

Paralog	Evidence	Comments
Glyma06g08520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g079400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08400

Limit To All Plant Sequences

>Glyma04g08400.1   sequence type=CDS   gene model=Glyma04g08400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGCGCACAGTCCCGAATAGACAACGAGGAATCCGTGTCTCGCTGCAAGGACCGCAAAAACCTCATGAAAGATGCCGTCGTCGCTCGGAACGCCTTCGCCGCAGGCCATTCCGGCTACGCCTTCGCCCTCAAGAACACCGGCGCCGCCCTCAGTGACTACGCCCACGGCGAGACCTACGACCTCCACGTTCCCCCCCTCGACCCTCCCTCCTCCTCCGCTGACCCTCCGCCTCCGCCTCCGCCGCCCATTGACGACAGCCTCCCTCCCCCTCCGCCGCCTCTCCCGGAGTTCTCCCCCGCGCCGGCTCCGCTTGCTCGCTCCGTCACCATGCCCGCCGGTGTCATGCACCACCACCACCGCAGCCCCATCCCCCTCTCCATCGCCGAGGAGGACGAAGAGGAAGAAGCAACCCCCAAGCAGGCGAAGAAAACCGCCGGATCGCCGCCGGAGATGAAGACACCGCCGCCGCCGCCTCCGGAGTCGAAGGGCATGGCTTGGGATTACTTCTTCATGGTGGAGAACATGCCTGGACCTTCTCTAAGTGCTGAAGATGATAATGATAGTCATATTCATGATGATGATGGTGAGGGTAAAATGGAGAATGTGGTTGAAGATGAGGTTGAGCCTAAGACACCAGAGAAAGTGCAGGAGCATGAAAATGTAAACGTTCATGAAGAGCATGATGATGAGATAAGTGAGGCGAAGAAACACATTGAGCACTCTAAAACTGCTCCAGCTGAGTTTAGAAGAGCTATAAAGGTGGTTCCTTCTGTTACTCTTATGCAGATTCTCAATGTCCTTGATGATCACTTCTTGAAGGCCTCCGAGGGTGCTCAGGAAGTTACCAAGATGCTTGAGGCCACTAGGTTGCATTATCATTCCAATTTCGCGGATAATCGCGGGCACATTGATCATTCTGCTAGGGTTATGCGTGTCATAACGTGGAATAGGTCCTTCAGAGGTGTGTCCAATGGGGATGCCGCCAAAGATGACATTGATTCTGAGGAGTATGAAACTCATGCCACTGTTTTGGATAAGTTGTTGGCATGGGAGAAGAAACTTTATGAAGAGGTCAAGCAAGGTGAGCTTATGAAGTTTGAATATCAGAGAAAAGTTGCAATTCTAAACAAGCAGAAGAAGCGTGGTGCCAGTGCTGAATCCTTAGAAAAGACTAAAGCAGCTGTTAGTCATTTGCATACAAGATATATTGTTGACATGCAGTCAATGGATTCAACAGTTTCAGAAGTGAACCATATTCGAGACGCCCAGTTGTATCCGAAACTTGTTGCTCTTATTATTGAGATGGCAAATATGTGGGAAAATATGTGCATACATCATGACAGCCAGCTGAAAATAGTAACAGACCTCAAATCTCTTGATATTTCTCAAGCTCCTAAGGAAACAACCAAGCATCATTACGATCGCACTGTGCAACTTGAGAAAGTCATCCAGGAATGGCATTTACAATTTGAGAAGCTTGTAACTCAACAGAAACATTACATCAAAGCTCTTAACAGCTGGCTAAAGTTAAATCTCATTCCTATTGAAAGCAACCTAAAAGAGAAAATCTCATCCCCTCCAAAGGCACAGAATCCACCAATCCAAGCCCTTCTCCATGCATGGCATGATTATGTTGACAAGCTTCCTGATGAGCTTGCCAAATCTGCTATTTCCTCCTTTGTTGCCGTGATAAAGACAATCATACTTCAGCAGGAGGAAGAGATGAAGTTAAAGGAGCGATGTGAGGAAACCAGAAAGGAATACTTCAAGAAGAAACAAGCATTTGAGGAATGGTACCAGAAGCATTTAATGCGGAGAGGGCCTGATGAAGCAGAACATGAAAGAGGAGAGGAAGTAAACGCAAACAATCCTGTCTCAGAGAGGCAGTTTGTTGTTGAGAGCTTGAAGAAGAGATTAGAAGAGGAAATTGAATCTCACCAAAAACATTGTGTTCAGGTGCGAGAGAAATCACTGCAGAGTCTCAAAACTCGCTTGCCCGAACTCTTCCGTGCTTTGTCAGACTATGCTCATGCCTGTGCTGATGCTTATGAGAAACTGAAGTTAATCACACAGTCACGAGGTGGTGAGGCATGA

Predicted protein sequences of Glyma04g08400

Limit To All Plant Sequences

>Glyma04g08400.1   sequence type=predicted peptide   gene model=Glyma04g08400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCAQSRIDNEESVSRCKDRKNLMKDAVVARNAFAAGHSGYAFALKNTGAALSDYAHGETYDLHVPPLDPPSSSADPPPPPPPPIDDSLPPPPPPLPEFSPAPAPLARSVTMPAGVMHHHHRSPIPLSIAEEDEEEEATPKQAKKTAGSPPEMKTPPPPPPESKGMAWDYFFMVENMPGPSLSAEDDNDSHIHDDDGEGKMENVVEDEVEPKTPEKVQEHENVNVHEEHDDEISEAKKHIEHSKTAPAEFRRAIKVVPSVTLMQILNVLDDHFLKASEGAQEVTKMLEATRLHYHSNFADNRGHIDHSARVMRVITWNRSFRGVSNGDAAKDDIDSEEYETHATVLDKLLAWEKKLYEEVKQGELMKFEYQRKVAILNKQKKRGASAESLEKTKAAVSHLHTRYIVDMQSMDSTVSEVNHIRDAQLYPKLVALIIEMANMWENMCIHHDSQLKIVTDLKSLDISQAPKETTKHHYDRTVQLEKVIQEWHLQFEKLVTQQKHYIKALNSWLKLNLIPIESNLKEKISSPPKAQNPPIQALLHAWHDYVDKLPDELAKSAISSFVAVIKTIILQQEEEMKLKERCEETRKEYFKKKQAFEEWYQKHLMRRGPDEAEHERGEEVNANNPVSERQFVVESLKKRLEEEIESHQKHCVQVREKSLQSLKTRLPELFRALSDYAHACADAYEKLKLITQSRGGEA*

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