SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32690 | AT | Annotation by Michelle Graham. TAIR10: hemoglobin 3 | chr4:15765486-15766862 FORWARD LENGTH=175 | SoyBase | E_val: 2.00E-72 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0015671 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxygen transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005344 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxygen transporter activity | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0019825 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxygen binding | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| PF01152 | PFAM | Bacterial-like globin | JGI | ISS | |
| UniRef100_I1JUQ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUQ8_SOYBN | SoyBase | E_val: 7.00E-137 | ISS |
| UniRef100_Q6QDC2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 2-on-2 hemoglobin n=1 Tax=Glycine max RepID=Q6QDC2_SOYBN | SoyBase | E_val: 3.00E-96 | ISS |
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Glyma04g08380 not represented in the dataset |
Glyma04g08380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g079200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g08380.2 sequence type=transcript gene model=Glyma04g08380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AACGGGTTGGGTTGGGTCGGATAAGGAATATCCGTGGAGAAGATCTCATTTTATATACTTTAAATAAGTTATAAATCAAGTTACTAATTAAATGAAGTTTCTATTGGCATGCGTAGTTGAAAAGAAGATGATGTGATGTTGTATTGAGGGAGTGATAATTGGCGATGCAGAGTCTGCAACAGAAGGCCTCTGAATGGAGTGGAGTTTCCATAGCTGATGCTTTTGCCATAGACGAGGCCAATTTGTTTCACAAGCTTGGCCTTCAAACCTTGGTTAATCTCTCTACCAATTTCTACAACAGGGTGTATGACGACGACCAAGAGTGGTTTCGTTCAATATTTGCCAATTCTGACAAACAGAACGCAATTCAGAACCAGATCGAGTTCCTCGTCCAGAGAATGGGTGGCCCCACTCTCTATTCTCAAAGAAGAGGGCACCCTGCACTAATCGCTAGACATCGACCATTTCCTCTCACGCATGAAGCTGCAAACAGGTGGTTACATCATATGGGACAAGCATTGGACAGTACCTCAGCCATAGATGATGACTCAAAGATCAAACTCATCAACTTTTTCAGGCACACTGCATATTTCCTTGTGGCTGGAGTTGAGCAAAAGGATCAAAACTTTCACGTACCGTGTAAGGATGCAGCCCTGAAGCAGCACCCATGTAAAAACTTTTAGCATTTTTCTCTTTGTGCAACGTTGACAAGAATAAGGTATCATCATATCAGATGTCAAATACAATGTTCGATGATCAGTTTGTATTTGAGGATATTCTAAACTCAAGCATTATTATGTTTCATAAACGAATCTCGTTAATTAGTTTGTTACGATAAATTGTTACAAATCAGGAACAGTTAGGATTAACAAAATAAGTGCTAATTAATATTGTGGTGCATGTGTATATAAAGTAAGGTGGTCAGTGTGCATAAAAAAAAAAGATAGAAAAGAGTAACGAGCGTAACTTTATTTAAGTTCAAGGAATTTTAATGTAATTTACCCTATGTTTTAATGCGTCCCACATAAAAAATAAAATAAAAAAGAGGAAAAAAGTTATTCTCTATCATACAC
>Glyma04g08380.1 sequence type=CDS gene model=Glyma04g08380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAGTCTGCAACAGAAGGCCTCTGAATGGAGTGGAGTTTCCATAGCTGATGCTTTTGCCATAGACGAGGCCAATTTGTTTCACAAGCTTGGCCTTCAAACCTTGGTTAATCTCTCTACCAATTTCTACAACAGGGTGTATGACGACGACCAAGAGTGGTTTCGTTCAATATTTGCCAATTCTGACAAACAGAACGCAATTCAGAACCAGATCGAGTTCCTCGTCCAGAGAATGGGTGGCCCCACTCTCTATTCTCAAAGAAGAGGGCACCCTGCACTAATCGCTAGACATCGACCATTTCCTCTCACGCATGAAGCTGCAAACAGGTGGTTACATCATATGGGACAAGCATTGGACAGTACCTCAGCCATAGATGATGACTCAAAGATCAAACTCATCAACTTTTTCAGGTTTGTTTTCTTCCCCCAAGTACCTCTTCATTTCATGGAGAACACGTTCATAACAACCTTAATTACTTTTTCAGGCACACTGCATATTTCCTTGTGGCTGGAGTTGAGCAAAAGGATCAAAACTTTCACGTACCGTGTAAGGATGCAGCCCTGA >Glyma04g08380.2 sequence type=CDS gene model=Glyma04g08380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAGTCTGCAACAGAAGGCCTCTGAATGGAGTGGAGTTTCCATAGCTGATGCTTTTGCCATAGACGAGGCCAATTTGTTTCACAAGCTTGGCCTTCAAACCTTGGTTAATCTCTCTACCAATTTCTACAACAGGGTGTATGACGACGACCAAGAGTGGTTTCGTTCAATATTTGCCAATTCTGACAAACAGAACGCAATTCAGAACCAGATCGAGTTCCTCGTCCAGAGAATGGGTGGCCCCACTCTCTATTCTCAAAGAAGAGGGCACCCTGCACTAATCGCTAGACATCGACCATTTCCTCTCACGCATGAAGCTGCAAACAGGTGGTTACATCATATGGGACAAGCATTGGACAGTACCTCAGCCATAGATGATGACTCAAAGATCAAACTCATCAACTTTTTCAGGCACACTGCATATTTCCTTGTGGCTGGAGTTGAGCAAAAGGATCAAAACTTTCACGTACCGTGTAAGGATGCAGCCCTGAAGCAGCACCCATGTAAAAACTTTTAG
>Glyma04g08380.1 sequence type=predicted peptide gene model=Glyma04g08380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQSLQQKASEWSGVSIADAFAIDEANLFHKLGLQTLVNLSTNFYNRVYDDDQEWFRSIFANSDKQNAIQNQIEFLVQRMGGPTLYSQRRGHPALIARHRPFPLTHEAANRWLHHMGQALDSTSAIDDDSKIKLINFFRFVFFPQVPLHFMENTFITTLITFSGTLHISLWLELSKRIKTFTYRVRMQP* >Glyma04g08380.2 sequence type=predicted peptide gene model=Glyma04g08380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQSLQQKASEWSGVSIADAFAIDEANLFHKLGLQTLVNLSTNFYNRVYDDDQEWFRSIFANSDKQNAIQNQIEFLVQRMGGPTLYSQRRGHPALIARHRPFPLTHEAANRWLHHMGQALDSTSAIDDDSKIKLINFFRHTAYFLVAGVEQKDQNFHVPCKDAALKQHPCKNF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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