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Report for Sequence Feature Glyma04g08300

Feature Type:gene_model
Chromosome:Gm04
Start:6488376
stop:6489465
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G44460AT Annotation by Michelle Graham. TAIR10: calmodulin like 43 | chr5:17917286-17917831 FORWARD LENGTH=181 SoyBaseE_val: 3.00E-19ISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF43Panther CALMODULIN RELATED JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_C6T553UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T553_SOYBN SoyBaseE_val: 9.00E-124ISS
UniRef100_G7J2W3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding protein CML42 n=1 Tax=Medicago truncatula RepID=G7J2W3_MEDTR SoyBaseE_val: 2.00E-71ISS

Expression Patterns of Glyma04g08300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08300
ParalogEvidenceComments
Glyma06g08400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08300 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g078400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g08300
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g08300
>Glyma04g08300.1   sequence type=CDS   gene model=Glyma04g08300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATAGCAGAAGCATGCTCCAGATTCCTTGGGGACTTTTTACAAGCATTGAAATGCTCCCCACAAAGCTCAGTGTCTCACCTTGATCACAAGCCCCAGAATGTGCTCAAACTTAATGACAAGATGGTTGGTGCCCTTGTCAGTGTTTTTGGCATGGAAACCAACGGAAGAATCAAGAAGGAAAATGCTAGGCAAGTGGTGGAGAAGCTAGGTTTGATGTATGATAAGTCCTCATCATCATCAGGGTTTGAGCTAACTAAGGGTGGCTTGCTGGATGATGAAGTGCCTGTGGAAGAGGTGCTTGGTGAGTTGGAGGACATGTCAAAGCGGAGTGAGCTTTTGCATGAAGCCTTCAAGATCTTTGATGAGGATGGGGATGGATACATAGATGCAATGGAGTTGAAGAGGGTGCTTGATTGCTTGGGGTTGGACAAGGGTTGGGATATGAGTGCTATTGAGAAGATGGTGAAGGTTGCTGATTTGAACTTTGATGGCAAGGTTGATTTTGGTGAGTTTGAATTGATGATGGGGTAG
Predicted protein sequences of Glyma04g08300
>Glyma04g08300.1   sequence type=predicted peptide   gene model=Glyma04g08300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIAEACSRFLGDFLQALKCSPQSSVSHLDHKPQNVLKLNDKMVGALVSVFGMETNGRIKKENARQVVEKLGLMYDKSSSSSGFELTKGGLLDDEVPVEEVLGELEDMSKRSELLHEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMSAIEKMVKVADLNFDGKVDFGEFELMMG*






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