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Report for Sequence Feature Glyma04g08270

Feature Type:gene_model
Chromosome:Gm04
Start:6462354
stop:6465250
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08270
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31330AT Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF599 | chr4:15202354-15203151 FORWARD LENGTH=239 SoyBaseE_val: 5.00E-117ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04654PFAM Protein of unknown function, DUF599 JGI ISS
UniRef100_I1JUP9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUP9_SOYBN SoyBaseE_val: 2.00E-171ISS
UniRef100_Q9LXB0UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT5g10580/F12B17_70 n=1 Tax=Arabidopsis thaliana RepID=Q9LXB0_ARATH SoyBaseE_val: 4.00E-113ISS

Expression Patterns of Glyma04g08270
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08270
ParalogEvidenceComments
Glyma06g08360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08270 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g078100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g08270
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g08270
>Glyma04g08270.1   sequence type=CDS   gene model=Glyma04g08270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATGGAAGAAGTGTTATTTGGATGTGATATTGGTGCCCTTAGGATTTCTTATAAGCATTGGTTATCATTTCTGGCTGTGGTACACTGTTCGAACACATCCACATACAACTATCATTGGCATCAACGCCAGTGGTCGACGAAATTGGGTTGCGGCCATGATGAAGGACAATGACAAAAAGAACATCCTCGCTGTTCAATCACTTAGGAACACAATCATGGGTGCGACCCTAATGGCCACAACCTCTATTCTCCTATGCTCAGGCCTAGCAGCAATCGTAAGCAGCACCTACAGTGTGAAGAAGCCTCTTGAGGACACAGTTTATGGGGGTCATGGAGAGTTCATGATATCACTCAAATATGTCACTTTGCTCTCTATTTTCCTCTTCTCATTCTTCTGCCACTCTTTGTCCATAAGGTTCATAAACCAAGTCAACATCCTAATCAACACCCCTCAGGACCCCATGTCGTCCTTGGTCACCCCTGAATATGTCAATGAGATTTTGGAGAAAGGCTTCCTTCTAAACACTGTTGGAAACAGACTCTTTTATGCGGCACTTCCTCTGCTGCTTTGGATATTTGGCCCCGTGTTGGTGTTCCTGTGCTCTCTCACTATGGTTCCAGTGCTTTACAATCTTGACTTTGTGGTTACTAGTACTAACAAGGGAACGATGGACGACGTCAATCAGAATAGAGATTTTTTATGA
Predicted protein sequences of Glyma04g08270
>Glyma04g08270.1   sequence type=predicted peptide   gene model=Glyma04g08270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWKKCYLDVILVPLGFLISIGYHFWLWYTVRTHPHTTIIGINASGRRNWVAAMMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAIVSSTYSVKKPLEDTVYGGHGEFMISLKYVTLLSIFLFSFFCHSLSIRFINQVNILINTPQDPMSSLVTPEYVNEILEKGFLLNTVGNRLFYAALPLLLWIFGPVLVFLCSLTMVPVLYNLDFVVTSTNKGTMDDVNQNRDFL*






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