Glyma04g08220 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g08220

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6434824
stop:	6435858
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25890	AT	Annotation by Michelle Graham. TAIR10: Oleosin family protein \| chr2:11037435-11037884 FORWARD LENGTH=149	SoyBase	E_val: 8.00E-37	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0012511	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: monolayer-surrounded lipid storage body	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF01277	PFAM	Oleosin	JGI		ISS
UniRef100_I1JUP4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oleosin n=1 Tax=Glycine max RepID=I1JUP4_SOYBN	SoyBase	E_val: 1.00E-116	ISS
UniRef100_I1JUP4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Oleosin n=1 Tax=Glycine max RepID=I1JUP4_SOYBN	SoyBase	E_val: 1.00E-116	ISS

Expression Patterns of Glyma04g08220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08220

Paralog	Evidence	Comments
Glyma06g08290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g077600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08220

Limit To All Plant Sequences

>Glyma04g08220.1   sequence type=CDS   gene model=Glyma04g08220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCATTTCTGATCAACCTAGAGGGTCCTACTCCTATGGAACCTCATATGGAGCACCCTATGGAACCACGTATGAGACCAACACCAGCATTAACAACCCACCTTCACGCCAAACAGTGAAGTTCATAACTGCTGCCACTATTGGCATCACACTCTTGCTCCTGTCTGGGTTGACCCTCACAGGCACTGTCATAGGTTTGATCATTGCAACCCCTCTTCTTGTTATCTTCAGCCCCATCCTTGTCCCTGCTGCGTTTGTGCTGTTCCTAGTTGCTTCTGGCTTTTTGTTCTCTGGGGGCTGTGGTGTGGCTGCCATTGCTGCTTTGTCTTGGATTTACAACTATGTGTCTGGGAACCAGCCTGCGGGTTATGACACCCTTGACTATGCAAAAGGGTACCTTGCCGATAAGGCAAGGGATGTAAAGGAGAGGGCAAAGGATTATGGAAGTTATGCTCAAGGTAGAGAGGGTAGCAGGTTTGTCTGCAAGGTAGCAAAACACTAA

Predicted protein sequences of Glyma04g08220

Limit To All Plant Sequences

>Glyma04g08220.1   sequence type=predicted peptide   gene model=Glyma04g08220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATISDQPRGSYSYGTSYGAPYGTTYETNTSINNPPSRQTVKFITAATIGITLLLLSGLTLTGTVIGLIIATPLLVIFSPILVPAAFVLFLVASGFLFSGGCGVAAIAALSWIYNYVSGNQPAGYDTLDYAKGYLADKARDVKERAKDYGSYAQGREGSRFVCKVAKH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain