Glyma04g08210 - SoyBase

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Report for Sequence Feature Glyma04g08210

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6430090
stop:	6432226
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31310	AT	Annotation by Michelle Graham. TAIR10: AIG2-like (avirulence induced gene) family protein \| chr4:15191325-15192337 FORWARD LENGTH=172	SoyBase	E_val: 7.00E-61	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010264	GO-bp	Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
PF06094	PFAM	AIG2-like family	JGI		ISS
UniRef100_B4FVZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AIG2-like protein n=1 Tax=Zea mays RepID=B4FVZ7_MAIZE	SoyBase	E_val: 1.00E-70	ISS
UniRef100_C6TFS9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TFS9_SOYBN	SoyBase	E_val: 6.00E-127	ISS

Expression Patterns of Glyma04g08210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08210

Paralog	Evidence	Comments
Glyma06g08270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g077500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g08210

Limit To All Plant Sequences

>Glyma04g08210.2   sequence type=transcript   gene model=Glyma04g08210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAAGCATAGTTATTAAAATAGAGGGAGTTAAGTGACAGTAGAGGGGAAGAAGGAAAGAAAGATGAGCGTGAAGTTGAATTGCGTGGGTGGTGGCGAGACTCACAACGTCTTCGTTTACGGTAGTCTGTTAGCCGATGAGGTTGTCCATACCCTATTGAAGCGCGTCCCTCCAACCGCACCCGCCATCCTTCACGACTATCACAGGTTTAAGATCAAAGGTCGCGTTTATCCCGCTATTCTCCCCGTCCAAAACAACAAAGTTAATGGCAGGGTGCTTCTTGGTATCTCCGGAGTAGAACTAGATATCTTAGATGAGTTCGAGGATGTTGAATATACTAGAACTGATGTTGAGGTTTCCTTGAAGGACAAGTCTGAAAAGTTACAAGTTTGCGCTTATGTTTGGAGCAACCCAAATGATCCTAACTTAAATGCAGAGTGGGATTTTGAGGTCAGCAACCATGCCATCTTTCTTATTTCCATTTTCTCCTCTCAAAATCAATACAATTCTCAAATGTTTTGGGGACAAAAGAGAAACATCAAATGACCTTCAAA

Coding sequences of Glyma04g08210

Limit To All Plant Sequences

>Glyma04g08210.1   sequence type=CDS   gene model=Glyma04g08210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGTGAAGTTGAATTGCGTGGGTGGTGGCGAGACTCACAACGTCTTCGTTTACGGTAGTCTGTTAGCCGATGAGGTTGTCCATACCCTATTGAAGCGCGTCCCTCCAACCGCACCCGCCATCCTTCACGACTATCACAGGTTTAAGATCAAAGGTCGCGTTTATCCCGCTATTCTCCCCGTCCAAAACAACAAAGTTAATGGCAGGGTGCTTCTTGGTATCTCCGGAGTAGAACTAGATATCTTAGATGAGTTCGAGGATGTTGAATATACTAGAACTGATGTTGAGGTTTCCTTGAAGGACAAGTCTGAAAAGTTACAAGTTTGCGCTTATGTTTGGAGCAACCCAAATGATCCTAACTTAAATGCAGAGTGGGATTTTGAGGAATGGAAACAAGTTCACTTGAATGATTTCGTCAAGATGACTGGTGGCTTTATGCAAGAGTTGGAATTGCCAGAATCAAAGCCAAGAGTGCAGACTTATGAAACCTTCTACAAGCAAGAAAACGATAAGCCACTTGAACCTTGA

>Glyma04g08210.2   sequence type=CDS   gene model=Glyma04g08210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGTGAAGTTGAATTGCGTGGGTGGTGGCGAGACTCACAACGTCTTCGTTTACGGTAGTCTGTTAGCCGATGAGGTTGTCCATACCCTATTGAAGCGCGTCCCTCCAACCGCACCCGCCATCCTTCACGACTATCACAGGTTTAAGATCAAAGGTCGCGTTTATCCCGCTATTCTCCCCGTCCAAAACAACAAAGTTAATGGCAGGGTGCTTCTTGGTATCTCCGGAGTAGAACTAGATATCTTAGATGAGTTCGAGGATGTTGAATATACTAGAACTGATGTTGAGGTTTCCTTGAAGGACAAGTCTGAAAAGTTACAAGTTTGCGCTTATGTTTGGAGCAACCCAAATGATCCTAACTTAAATGCAGAGTGGGATTTTGAGGTCAGCAACCATGCCATCTTTCTTATTTCCATTTTCTCCTCTCAAAATCAATACAATTCTCAAATGTTTTGGGGACAAAAGAGAAACATCAAATGA

Predicted protein sequences of Glyma04g08210

Limit To All Plant Sequences

>Glyma04g08210.1   sequence type=predicted peptide   gene model=Glyma04g08210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVKLNCVGGGETHNVFVYGSLLADEVVHTLLKRVPPTAPAILHDYHRFKIKGRVYPAILPVQNNKVNGRVLLGISGVELDILDEFEDVEYTRTDVEVSLKDKSEKLQVCAYVWSNPNDPNLNAEWDFEEWKQVHLNDFVKMTGGFMQELELPESKPRVQTYETFYKQENDKPLEP*

>Glyma04g08210.2   sequence type=predicted peptide   gene model=Glyma04g08210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVKLNCVGGGETHNVFVYGSLLADEVVHTLLKRVPPTAPAILHDYHRFKIKGRVYPAILPVQNNKVNGRVLLGISGVELDILDEFEDVEYTRTDVEVSLKDKSEKLQVCAYVWSNPNDPNLNAEWDFEVSNHAIFLISIFSSQNQYNSQMFWGQKRNIK*

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