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Report for Sequence Feature Glyma04g08161

Feature Type:gene_model
Chromosome:Gm04
Start:6399375
stop:6403949
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08161
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G20325AT Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10980124-10982426 FORWARD LENGTH=277 SoyBaseE_val: 3.00E-110ISS
KOG4705 KOG Uncharacterized conserved protein JGI ISS
PTHR13383Panther FAMILY NOT NAMED JGI ISS
PTHR13383:SF10Panther SUBFAMILY NOT NAMED JGI ISS
PF09468PFAM Ydr279p protein family (RNase H2 complex component) JGI ISS
UniRef100_A8MRG8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease H2 subunit B n=1 Tax=Arabidopsis thaliana RepID=A8MRG8_ARATH SoyBaseE_val: 2.00E-107ISS
UniRef100_UPI0001BA8165UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001BA8165 related cluster n=1 Tax=unknown RepID=UPI0001BA8165 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g08161
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g08161 not represented in the dataset
Glyma04g08161 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08161
ParalogEvidenceComments
Glyma06g08230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08161 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g077000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g08161
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g08161
>Glyma04g08161.1   sequence type=CDS   gene model=Glyma04g08161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCGAGTATGTGCGTCTCTTACATTCCCGCCCGCGCTCCGTTTCAAGATTCAGTGCCACTCTCACTCGTCCTTCGTTATCTTCCGAGTAAACTCCCTCTACTCTCAAATTTACGGTTACCGGGGAAAGGAACAATCGGTTACTGGCAGTGTTAGGGCTTTTGAATCCTCTTCTGCTAAACCCATGAGTTGGTGTGATGGCGTTCTGGAACCACGGGTTCTCGTCGCACCCGATCCTGGTACTGATCGAAATGGTCTGGGACAGATGATATTGCTCCGCCATCCCAAATCTGGTAATGCAACACAATATCTGTTTGTAAATGGAATACTTCTAGAACTTCAGTGGTTTAAGAACTTGTATGGATCTTGGTTTTTGGGAGATTATATAACTGAAGATGGTCGGCTGTATTTATCCACACCAATTGATCCCGTTTTCATCATGTTGCCTATATTCAAGGAAGCTAGAATGAAGAAAGGGGATGATCTTGGGAGGTTCAGGCAATTGGATGAGATCTTGTTTGTTGATGGATATCCTGGATACATGCAGTTAATGTCTATTGTGGAGAACTGTATGCAAGTAGTTTCTGAAATCATAGAAGTTGGATCCTCAAAATTCTTCAGACTTGATGATTCAAAGGTTCTACGTTGGCTGTGCTATAAGGTTTGTCAGCTAAAACAGACACTACCCAAATTGGACAAAAACTATGCTGTTCAATCAGAGAAAGACACATTGATTGATGCAGTCTCTATATTAGGAGAGTATTTGAAGGAAGAGCCTTGGTTGCAGCTTTTGTGTAACCATCTTAAGTTAAATATACTTGAGGTTACTGGAAAAGCACAAGCAAATGCTGAAGGAAATAATAACTCACGTTTATGTAATGAATTACAGGAACAGAGTAATGATAAGAAGGGTACAACTGCAAAGAAAGGTAGACAAGCAAAGAAGGTAAAATTGGAGACAGAATCACACAACATCAAAGACATGTTTTCGAGGGCCTCCCGAAAGAAAAGTTAA
Predicted protein sequences of Glyma04g08161
>Glyma04g08161.1   sequence type=predicted peptide   gene model=Glyma04g08161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARVCASLTFPPALRFKIQCHSHSSFVIFRVNSLYSQIYGYRGKEQSVTGSVRAFESSSAKPMSWCDGVLEPRVLVAPDPGTDRNGLGQMILLRHPKSGNATQYLFVNGILLELQWFKNLYGSWFLGDYITEDGRLYLSTPIDPVFIMLPIFKEARMKKGDDLGRFRQLDEILFVDGYPGYMQLMSIVENCMQVVSEIIEVGSSKFFRLDDSKVLRWLCYKVCQLKQTLPKLDKNYAVQSEKDTLIDAVSILGEYLKEEPWLQLLCNHLKLNILEVTGKAQANAEGNNNSRLCNELQEQSNDKKGTTAKKGRQAKKVKLETESHNIKDMFSRASRKKS*






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