Glyma04g08140 - SoyBase

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Report for Sequence Feature Glyma04g08140

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6380293
stop:	6386086
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24370	AT	Annotation by Michelle Graham. TAIR10: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain \| chr2:10369979-10373063 REVERSE LENGTH=788	SoyBase	E_val: 0	ISS
GO:0002238	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF203	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00582	PFAM	Universal stress protein family	JGI		ISS
UniRef100_G7J2U3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J2U3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339C62	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339C62 related cluster n=1 Tax=unknown RepID=UPI0002339C62	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08140

Paralog	Evidence	Comments
Glyma06g08210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g076800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08140

Limit To All Plant Sequences

>Glyma04g08140.1   sequence type=CDS   gene model=Glyma04g08140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCTGTCAAAGCATCACTCAGAGAAGAAGGATGGTGTGAATGGATTAGTAGCAGTGGCAATTGATAAAGAAAAAGGGGGCCAAAATGCACTAAAATGGGCAGTTGACAATCTCCTCACAAGAAGTTCAACTGTAATTCTCATCCATGTCAAGCTTCTCGCGCCAACTCTATCTCCGTCACCTTCTCTTTTCACCCCAAGGATAAGTGCTCTCCTTGGCGATGATACTTCACTGGTATCTAAAGAACCAGAAGGCAATAACAAAAACGTTTTCCTCCCATATCGTGTCTTCTGTACACGGAAAGATATACAATGCAAGGACGTTCTACTAGAAGATTCAGATATATCCAAAGCACTAATTGAATATGCTTCACAGGCGGGAATTGAGCATCTGGTTCTTGGCTCTTCAACAAAAACTAGCTTGCTCAAAAGATTCAAGGTATCAGATATTCCAGGAGCAGTTTCAAAAGGGGCACCAGATTTCTGTACAGTCTATGTTATTGCTAAAGGAAAGATTCAAACAGTGCGATCTGCTTCTCGACCTGCGCCGGCCATTGTCCCTAACCTGCTCAGTCAAGCAAGTGTCAGGACAGACCATTCAGACCCAAATGTGCCATTGACTCAAAGCATAAAAGAACAAGAAAGACATTCCTTTGATGCTGCAGCACCGCGTAGATCACTGGATGAATCAGAACCATTCAGGTCACCATTCACTTGGAAAGGTTACAATGGAAGACAATATGGGGACACTCCCAAGCCAGATAAGGACATATCCTTTGTAAGTACCGGAAGAAAAAGCATAGAAAACTTGTTCCCTTCGTTGAACTCAGATTCAGGATTTTCCAACCATCGACTATCATTGGGCTCAGACATAGATGGAAGCTTCAGCTTAGAGTCAATGCATGATGGAAGGAAGTCTACGGAAACTGGCACTCCTCCTGAATTCCCATCCCTCTCATTTGAGAGTGACCAGCATTCATCTTCTACATCACAAGCCGTGGATGACATGGAGGCTGAAATGAGGAGATTGAAGTTGGAACTGAAGCAAACCATGGAACTGTATAACACAGCCTGTAAAGAAGCAGTCACAGCACAACAGAAGGCAGTGGAACTTCAGAAGTGGAAACTAGAAGAAGAGAGGAGATTGGAAGAGGCAAGGCTTGCTGAGGAAACAGCATTGGCGATTGCCGAAAAGGAGAGAGCAAAGTCTAAAGCAGCCATTGAGGCTGCTGAAGCACAAAAGAGGATTGCAGAACTGGAAGCACAGAAGAGACTCAATGCAGAAATGAAAGCACTTAGAGAATCAGAAGAGAAAAAAAAATTGCTTGATGCTTTGGTAAATGTAGATGTGAGGTATAGAAGGTACACAATCGAGGAGATTGAAGCTGCAACAGATTTTTTTGCAGAATCCCTGAAAATTGGAGAAGGGGGATATGGTCCAGTTTTTAAGTGCCTTTTGGATCACACACCTGTTGCAGTCAAGGTTCTACGCCCTGATGCACAACAAGGAAGATCACAGTTTCAACGAGAGGTTGAGGTGTTGAGCTGCATACGGCATCCAAACATGGTTCTCCTCCTAGGTGCGTGTCCAGAATACGGGTGTCTAGTGTATGAGTACATGGCAAATGGAAGCTTGGATGATTGCCTCTTTCGAAAAGGCAGCACTCCCCCACTTCCTTGGCAGCTAAGGTTCAAAATAGCAGCTGAAATAGGCACAGGCTTGCTGTTCCTGCACCAGACAAAACCAGAACCTCTGGTGCACAGAGACTTGAAACCAGCCAACATCTTGCTAGACAGAAACTATGTGGCCAAAATCAGTGACGTAGGTTTGGCCAGGCTAGTTCCACCGTCTGTGGCGGACAGTGTCACGCAATATCACATGACATCCACAGCAGGAACCTTCTGCTACATAGATCCTGAGTATCAGCAGACAGGTATGTTAGGGGTGAAGTCAGACATATACTCCCTTGGGATCATTTTTTTGCAAATTTTGACAGCAAAATCACCAATGGGTTTGACCCATCATGTTGAAAGGGCCATAGAGAATGGAATTTTTACTGAGATGTTGGATCCATCAGTGCTTGATTGGCCAGTGGAGGATGCCTTGAAGCTTGCTAAGATGGGACTGCAGTGTGCCGAATTAAGGCGCAGAGACAGACCTGATCTTGGCAAGGTTATCCTACCAGAACTCAACAGGCTAAGAGACCTTGCTGAAGATAATAATCTAATTTCAGTTATGGGTAACTCTATGGATGCCCACCTTGAGAAACAACTTTCTGTGCATTTGGATGGAGGTGTCCATCATTTACTCGGTCGGGGGAAATTAGAGCAAACAATTCAGTCGGTTTTTTACTAG

Predicted protein sequences of Glyma04g08140

Limit To All Plant Sequences

>Glyma04g08140.1   sequence type=predicted peptide   gene model=Glyma04g08140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWLSKHHSEKKDGVNGLVAVAIDKEKGGQNALKWAVDNLLTRSSTVILIHVKLLAPTLSPSPSLFTPRISALLGDDTSLVSKEPEGNNKNVFLPYRVFCTRKDIQCKDVLLEDSDISKALIEYASQAGIEHLVLGSSTKTSLLKRFKVSDIPGAVSKGAPDFCTVYVIAKGKIQTVRSASRPAPAIVPNLLSQASVRTDHSDPNVPLTQSIKEQERHSFDAAAPRRSLDESEPFRSPFTWKGYNGRQYGDTPKPDKDISFVSTGRKSIENLFPSLNSDSGFSNHRLSLGSDIDGSFSLESMHDGRKSTETGTPPEFPSLSFESDQHSSSTSQAVDDMEAEMRRLKLELKQTMELYNTACKEAVTAQQKAVELQKWKLEEERRLEEARLAEETALAIAEKERAKSKAAIEAAEAQKRIAELEAQKRLNAEMKALRESEEKKKLLDALVNVDVRYRRYTIEEIEAATDFFAESLKIGEGGYGPVFKCLLDHTPVAVKVLRPDAQQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRKGSTPPLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVAKISDVGLARLVPPSVADSVTQYHMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTAKSPMGLTHHVERAIENGIFTEMLDPSVLDWPVEDALKLAKMGLQCAELRRRDRPDLGKVILPELNRLRDLAEDNNLISVMGNSMDAHLEKQLSVHLDGGVHHLLGRGKLEQTIQSVFY*

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