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Report for Sequence Feature Glyma04g08131

Feature Type:gene_model
Chromosome:Gm04
Start:6371267
stop:6378169
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08131
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17370AT Annotation by Michelle Graham. TAIR10: oligouridylate binding protein 1B | chr1:5951842-5954825 REVERSE LENGTH=419 SoyBaseE_val: 5.00E-176ISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003730GO-mf Annotation by Michelle Graham. GO Molecular Function: mRNA 3'-UTR binding SoyBaseN/AISS
KOG0148 KOG Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) JGI ISS
PTHR24012Panther FAMILY NOT NAMED JGI ISS
PTHR24012:SF210Panther JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_C6THT7UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6THT7_SOYBN SoyBaseE_val: 0ISS
UniRef100_G7J2U1UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein n=2 Tax=Medicago truncatula RepID=G7J2U1_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g08131
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g08131 not represented in the dataset
Glyma04g08131 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08131
ParalogEvidenceComments
Glyma06g08200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08131 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g076700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g08131
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g08131
>Glyma04g08131.1   sequence type=CDS   gene model=Glyma04g08131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACAGAGGCTAAAGTTGCAGCAACAACAGGCCCTCATGCAGCAAGCTTTGCTTCAACAGCAGCAGATGTACCACCCTGGCATGCTCGCCGCTGCTATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATGTGCCTCCTGGTTTTGATACGTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACCGATAAACTTCTTGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCACGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGACAACTGTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGACACGTCAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCAATAAATGATATGACAGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTGGCAGTTCCAATGAAGAGAAGATTAATGACAGTCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGGATGCCCTGATAACAATCCTTCATACACCACAGTTTATGTTGGCAACCTTCCTCATGATGTAACACAAGCTGAACTTCATTGTCAGTTCCATGCACTGGGGGCTGGGGTGATTGAGGAGGTTCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTCAGATACAACACTCATGACGAAGCTGCACTGGCCATTCAGATGGCTAATGGAAGACTTGTTCGTGGGAAGAATATGAAGTGTTCATGGGGTAGTAAACCAACTCCACCTGGAACGGCTTCAAACCCACTACCTCCTCCTGCTCAACCATATCAAATACTTCCCACTGCAGGGATGAACCAAGGGTATTCTCCTGCGGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCAGGTCAAACTCTTCTGCAAATGACTGGACAACATGGCCTAGCTCCAGCTTCGATGGGCGTAAACTCTGGGGCATCTCAAGCCATGTATGATGGATATACCGGTAATTCATCGAGACAGCAGCTTATGTACTATCGTTGA
Predicted protein sequences of Glyma04g08131
>Glyma04g08131.1   sequence type=predicted peptide   gene model=Glyma04g08131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNVPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSGCPDNNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMANGRLVRGKNMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQTLLQMTGQHGLAPASMGVNSGASQAMYDGYTGNSSRQQLMYYR*






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