Glyma04g08085 - SoyBase

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Report for Sequence Feature Glyma04g08085

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6337294
stop:	6341487
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08085

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24610	AT	Annotation by Michelle Graham. TAIR10: cyclic nucleotide-gated channel 14 \| chr2:10457105-10460351 FORWARD LENGTH=726	SoyBase	E_val: 0	ISS
GO:0006811	GO-bp	Annotation by Michelle Graham. GO Biological Process: ion transport	SoyBase	N/A	ISS
GO:0006813	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transport	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005216	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ion channel activity	SoyBase	N/A	ISS
GO:0005249	GO-mf	Annotation by Michelle Graham. GO Molecular Function: voltage-gated potassium channel activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0030551	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding	SoyBase	N/A	ISS
KOG0498	KOG	K+-channel ERG and related proteins, contain PAS/PAC sensor domain	JGI		ISS
PTHR10217	Panther	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	JGI		ISS
PTHR10217:SF7	Panther	POTASSIUM CHANNEL PROTEIN EAG-RELATED	JGI		ISS
PF00027	PFAM	Cyclic nucleotide-binding domain	JGI		ISS
UniRef100_G7J2T6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclic nucleotide-gated channel n=1 Tax=Medicago truncatula RepID=G7J2T6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A18E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A18E related cluster n=1 Tax=unknown RepID=UPI000233A18E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08085

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g08085 not represented in the dataset	Glyma04g08085 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08085

Paralog	Evidence	Comments
Glyma06g08170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08085 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g076400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08085

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08085

Limit To All Plant Sequences

>Glyma04g08085.1   sequence type=CDS   gene model=Glyma04g08085   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTAAAAAATGAGAAGCTAGTCTGGTTCTCCAATGATGGAAAACACACTCTTGAACCTCTTTGGGAGAAGATAGACGCTCACAAACACCATGAGAAGGCATTCCAAGTCTACCCAGAATTTAAAATTAGTAATGGTGAAAAGAACAGAATGAGTATCAAAATTGCCTCGCTTGGAAAGTTGAAGGTTTTCCCAGAAAATCACGAGCCACGGAAGAAGAGAATTCTTGATCCTGGAAGTGATGTTATTTTGGAGTGGAACCGGGCTTTCCTGTTTTCTTGCATTCTAGCACTGTTTGTTAAATTGTTTGTGACATGTTTCCGAACGTTTGCTGATGTTTTCTATCTGCTCAACATGGCCATCAAGTTCAGGACGGCCTATGTGTCACCGAATTCAAGGGTTTTTGCTAGGGGTGAGCTTGCTATGGATCCTAGGCTGATTGCAAGGCGGTATTTGAGATCAGAGTTCTTCCTAGATCTTGTTGCTACACTGCCTCTTCCCCAGATTGTGATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGCTGATCATACCAACAATGCACTTGTACTAATTGTTCTGCTTCAATATGTCCCCAGATTATATATGATTTTCCCATTAAGATCTCAGATTATTAAAGCCACTGGTGTGGTTACAAAGACAGCTTGGACTGGAGCTGCTTACAATTCTACTATACATGTCTTGGGTGCATCCTGGTACTTGTTATCAATTGAAAGGCATGCTACTTGCCGGAAATCTGAATGCAGAAATGAAAGCCTCCCTGTGAAATGTGCTCTTAAGTACTTAGATTGCAGTACTTTAAACCATGATGATCGCACGAAGTGGGTAAACACTACTTCTGTGTTTGGTAACTGCAATCCAGAAAATAGCATCAATTTCAACTATGGAATATTTGGAAATGCAGTGGAAAATAATGTTGTGTCCTCTGTGTTTAAAGAGAAGTATCTCTATTGTCTGTGGTGGGGCTTGCAGAACTTAAGTTCCTATGGCCAGAGTTTGACAACAAGCACGTTCGTTTGGGAAACTGCATTTGCAATACTCAGCTATTCTGGGTCTTGTTCTACCTATTTGCAATCCATTACTGTGAGGCTTGAAGAGTGGAGGCTCAAGCGACGTGACACTGAAGAGTGGATGAGCCATCGCCAGCTCCCACAAAATCTCAGAGAGCGAGTCCGAAGATTTGTTCAGTACAAGTGGCTTGCAACTCGTGGGGTTGATGAAGAAACAATCCTACGTGGCCTTCCTACTGACCTACGTAGAGATATCCAATGCCACCTTTGCCTGGACCTCGTTCGACGTGTTCCCTTTTTCTCACAAATGGATGATCAACTACTGGATGCCATATGTGAGAGATTGGTATCATCCTTGAGTACTCAAGGCACATACATAGTGAGAGAAGGAGACCCGGTTACAGAGATGCATTTTATCATCAGAGGGAAACTTGAAAGCTCAACCACAAATGGAGGCAGAACTGGTTTCTTCAACTCCATTACCTTGAGGCCTGGTGATTTCTGTGGAGAAGAGCTACTTGCTTGGGCATTGCTTCCAATATCCACTCTCAACTTGCCTTCGTCTACAAGAACTTTCCGACGTCTCCACAACAAGAAGTTACAGCACACTTTCCGTTTCTACTCTTACCATTGGAGGACATGGGCAGCGTGCTTCATTCAAGGGGCATGGCGCCGGTTCAAGAAGAGAATGTTGGCAAAGAGCCTTAGCTTGAGGGAATGCCAGTCCTTCAATCACGATGAAGAAGTCGGGGATGAAATGGAGCATGGGGAACAAGAGCACAGTGCAGTGACTTCAAACACTGCACAAGTGAAACAGAATCTAGGTGTCACTATACTGGCTTCAAGATTTGCTGCAAACACAAGGAGAGGGGTTCAGAAGATCAAGGATGTAGAGTTGCCCAAGTTTCAAAAGCCAGAAGAGCCAGACTTTTCAGTAGAGCCTTATGATGATTGA

Predicted protein sequences of Glyma04g08085

Limit To All Plant Sequences

>Glyma04g08085.1   sequence type=predicted peptide   gene model=Glyma04g08085   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELKNEKLVWFSNDGKHTLEPLWEKIDAHKHHEKAFQVYPEFKISNGEKNRMSIKIASLGKLKVFPENHEPRKKRILDPGSDVILEWNRAFLFSCILALFVKLFVTCFRTFADVFYLLNMAIKFRTAYVSPNSRVFARGELAMDPRLIARRYLRSEFFLDLVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYMIFPLRSQIIKATGVVTKTAWTGAAYNSTIHVLGASWYLLSIERHATCRKSECRNESLPVKCALKYLDCSTLNHDDRTKWVNTTSVFGNCNPENSINFNYGIFGNAVENNVVSSVFKEKYLYCLWWGLQNLSSYGQSLTTSTFVWETAFAILSYSGSCSTYLQSITVRLEEWRLKRRDTEEWMSHRQLPQNLRERVRRFVQYKWLATRGVDEETILRGLPTDLRRDIQCHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMHFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPISTLNLPSSTRTFRRLHNKKLQHTFRFYSYHWRTWAACFIQGAWRRFKKRMLAKSLSLRECQSFNHDEEVGDEMEHGEQEHSAVTSNTAQVKQNLGVTILASRFAANTRRGVQKIKDVELPKFQKPEEPDFSVEPYDD*

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