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Report for Sequence Feature Glyma04g08060

Feature Type:gene_model
Chromosome:Gm04
Start:6305276
stop:6307509
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31550AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 11 | chr4:15290065-15291458 REVERSE LENGTH=325 SoyBaseE_val: 7.00E-115ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
PF10533PFAM Plant zinc cluster domain JGI ISS
UniRef100_B0LUR5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Glycine max RepID=B0LUR5_SOYBN SoyBaseE_val: 2.00E-154ISS
UniRef100_UPI000233935EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233935E related cluster n=1 Tax=unknown RepID=UPI000233935E SoyBaseE_val: 0ISS

Proteins Associated with Glyma04g08060
LocusGene SymbolProtein Name
WRKY50 WRKY Transcription Factor

Expression Patterns of Glyma04g08060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08060
ParalogEvidenceComments
Glyma06g08120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g076200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g08060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g08060
>Glyma04g08060.1   sequence type=CDS   gene model=Glyma04g08060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACACCTCCTCCGTCTCCTCTCCCATCAACCTTCCCACCTCCGCACTCACCACACCGACGCCACCGTTTCCAACTTCAAAAAACTCATCTCCCTTCTCAACCGCCGCACCGGCCATGCCCGTTTCCGCCGCGCACCCCTCCCTTCCACTTCCAACTCTCTCGCCCCATCCCCTCCACCGGCTAACCCGGTCACCTTCGCCCCTTCGCAGTCACAGAGTCTAACCCTCGATTTCTCAAAACCTAACATGTTCAACACCACCAACGCCAAATCCATGGACCTCGAGTTCTCTAAAGAAACCTTCAGCGTCTCCTCCAACTCCTCCTTCATGTCCTCCGCTATCACCGGCGACGGTAGCGTCTCCAATGGCAAACTAGGATCCTCCCTCTTCCTCACTCCTCCGCCAGTCTCCGCCGGAAAACCTCCTCTCTCGTTTGCTCCGATCAAGAAGAGGTGCCACGACCACCGCGAGCACTCCGACGACATCTCCGGGAAACTCTCCGGCTCCAGCAAGTGCCACTGCATCAAGAGAAGGAAGAATCGTGTGAAGAAAACGGTTAGAGTTCCGGCGATTAGTTCGAAGGTCGCCGATATTCCGCCGGATGAGTACTCGTGGAGGAAGTACGGACAGAAGCCGATCAAGGGATCACCGTACCCGAGGGGGTATTACAAGTGCAGTACCGTGAGAGGGTGCCCGGCGAGGAAACACGTGGAGCGTGCTTCGGACGATCCGACGATGTTGATTGTAACGTACGAGGGGGAGCACCGACACTCGATTCAGACCGCGATGCAGGAGAACATTTCCGGGGGAGTGGGTTTGGTATTCGAGTCAACGTGA
Predicted protein sequences of Glyma04g08060
>Glyma04g08060.1   sequence type=predicted peptide   gene model=Glyma04g08060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHLLRLLSHQPSHLRTHHTDATVSNFKKLISLLNRRTGHARFRRAPLPSTSNSLAPSPPPANPVTFAPSQSQSLTLDFSKPNMFNTTNAKSMDLEFSKETFSVSSNSSFMSSAITGDGSVSNGKLGSSLFLTPPPVSAGKPPLSFAPIKKRCHDHREHSDDISGKLSGSSKCHCIKRRKNRVKKTVRVPAISSKVADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERASDDPTMLIVTYEGEHRHSIQTAMQENISGGVGLVFEST*






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