Report for Sequence Feature Glyma04g08050
Feature Type: gene_model
Chromosome: Gm04
Start: 6284389
stop: 6286013
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g08050
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G24890 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8558357-8559172 REVERSE
SoyBase E_val: 3.00E-28 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1JUN1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUN1_SOYBN
SoyBase E_val: 2.00E-179 ISS
UniRef100_Q9SJB0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9SJB0_ARATH
SoyBase E_val: 2.00E-21 ISS
Expression Patterns of Glyma04g08050
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g08050
Paralog Evidence Comments
Glyma06g08100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g08050 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g076000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g08050
Coding sequences of Glyma04g08050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g08050.1 sequence type=CDS gene model=Glyma04g08050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGTTTTGGTGGGTCCCGCTTTCACCATCGACGTTCCCTCGTCTCCGCCGCAGCATGCCGGTTCCGATGATCGGATCTTTCTTAACGTGTCACCCGAAGAAGGTGATGGGTCGAACTTTCGTATTTCGGGCCCACCCAAGTTCTTCGCCGGCGGCGAGTCGGAGAGTTCGTCGTCGATCGGAACCCCTGATGACAGCGACAACGAGGAGGAGGAAGAAGTGCAGAGCCAGTTAAAGATACGAACTGGGTTGGGTTCTTTGGATGCTTTGGAAGAATCTCTTCCCATCAAGAGGGGATTGTCGAGTCATTTTGATGGAAAATCAAAATCGTTCTCAGATCTATCTCAAATGAGTAATTTGAGTAATCTGAAGGAGTTGCAAAAGCAAGAGAGTCCTTTCAACAAGAGAAGAAGGGTTTTGATTGCATCCAAGTGGTCCAGAAGATCATCTTTCTATTCCTGGTCCAACCCACAATCCATGCCTCTTTTGCCTGTGGATGAGGATCAGGATTATGATTATGAAGAGGAAGAAGAAGAAGAAGATGACGAAGAAAAAGCTAGAAAAGTTCCCTCTGCTTCATCTTCTTCGTCTTCCTCCTTGGCCGAGGAAAAGAAACAAGAAGATCAGGTTCAGCTAAGACTCAACAGAGTGCCAGAATCTTATGCTGCTCATATGAGACTTAGACTTGGAAGCTTCAAGGCTAGAAGCTTTTCTCTTGCAGATCTGCAAGAGCATGATGATGAGGAAGAAGATGATGATTGA
Predicted protein sequences of Glyma04g08050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g08050.1 sequence type=predicted peptide gene model=Glyma04g08050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEVLVGPAFTIDVPSSPPQHAGSDDRIFLNVSPEEGDGSNFRISGPPKFFAGGESESSSSIGTPDDSDNEEEEEVQSQLKIRTGLGSLDALEESLPIKRGLSSHFDGKSKSFSDLSQMSNLSNLKELQKQESPFNKRRRVLIASKWSRRSSFYSWSNPQSMPLLPVDEDQDYDYEEEEEEEDDEEKARKVPSASSSSSSSLAEEKKQEDQVQLRLNRVPESYAAHMRLRLGSFKARSFSLADLQEHDDEEEDDD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
