Glyma04g08040 - SoyBase

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Report for Sequence Feature Glyma04g08040

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6270404
stop:	6279422
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10700	AT	Annotation by Michelle Graham. TAIR10: Peptidyl-tRNA hydrolase II (PTH2) family protein \| chr5:3378053-3378867 REVERSE LENGTH=200	SoyBase	E_val: 5.00E-71	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0004045	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA hydrolase activity	SoyBase	N/A	ISS
GO:0004725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity	SoyBase	N/A	ISS
KOG3305	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR11717	Panther	LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE	JGI		ISS
PTHR11717:SF2	Panther	PHOSPHOTYROSINE PROTEIN PHOSPHATASE	JGI		ISS
PF01981	PFAM	Peptidyl-tRNA hydrolase PTH2	JGI		ISS
UniRef100_I1JUN0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUN0_SOYBN	SoyBase	E_val: 1.00E-100	ISS
UniRef100_Q9FT62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-tRNA hydrolase II (PTH2) family protein n=1 Tax=Arabidopsis thaliana RepID=Q9FT62_ARATH	SoyBase	E_val: 3.00E-68	ISS

Expression Patterns of Glyma04g08040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08040

Paralog	Evidence	Comments
Glyma06g08080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g075900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g08040

Limit To All Plant Sequences

>Glyma04g08040.3   sequence type=transcript   gene model=Glyma04g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGAAATGAATGTAAAATAAAATATAACATGACGTTGTTAGGTACTGCACTGTCTATCAGTGTGATTAGGGTTACACTTACCCATTTACGCGCGCCTTCTTTCTCCAACCGGGCGAGTCGACTCAGCTCCAACTCAATGAGTCAATCCGCCGCCACCGCCGACCCCAACGCTATTGCGACAACGAATGACGCGCCGTCGCAGCCTGAAAACGCGGATGTTGTGGTGCAGTACGTGGTGCTCCGGCGAGACCTGATCGACACTTGGCCGCTAGGGAGCGTGGTCACTCAAGGTTGTCACGCTTCTGTTTCGGCCGTTTGGTCCAACAAAGAAGATCCTTTCACCGTTGATTATTGCAGCCCCGATAAAATTGATTCCATGCACAAAGTTACACTTGAAGTAAAGGGAGAACCCCAGATCAAAAACTTGTCTGAGAAGCTTACAGCTGGTGGGATTATTCACAAACTGTGGATTGAACAACCTGAAAACATACCTACGTGCCTTGCCACAAAACCTTACCCCAAGTCAAGCGTTTCTTCGTATTTTAAGAAGTTGAAACTCTATTGTTGAACTTGTCAAGTCTACAAAAGCTAATGAACTTCAAACGAAACAAAAAACACTGACTGTGGCTTGGGAAGGGGGAAGGAGTGGCTTGGAGGGGGGACCACGGGTCAGCTGGATGCGCCTGGGTCTCCAACGTGCCTGTTGCAGCAGCGCTACCCATCGCGTCTGCAGAGCGCTTTCTAAGTCATCTGCCACCCTGCCACGTGTTTTACCTTTACGGGGAACGCGCTCCTCAGGGAGACGCATTGTAATAAAAAAAGACCCACGGGATAAATAATTTTAAAATAGACCCATTTGGATAAATAATTTGTAAAAGAAATCCCATTTGATATTTTTGTCCTGGAAATAGGCCTTGTTTTCTTTTGACAAGTCAATTGTTGTTGTACTTTCTTTTGTTTGCATTTGAATTTTAGAGTACGACACATTTCCCAAATTAATATTATTATCTGAACTGATGTCTGG

>Glyma04g08040.4   sequence type=transcript   gene model=Glyma04g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGAAATGAATGTAAAATAAAATATAACATGACGTTGTTAGGTACTGCACTGTCTATCAGTGTGATTAGGGTTACACTTACCCATTTACGCGCGCCTTCTTTCTCCAACCGGGCGAGTCGACTCAGCTCCAACTCAATGAGTCAATCCGCCGCCACCGCCGACCCCAACGCTATTGCGACAACGAATGACGCGCCGTCGCAGCCTGAAAACGCGGATGTTGTGGTGCAGTACGTGGTGCTCCGGCGAGACCTGATCGACACTTGGCCGCTAGGGAGCGTGGTCACTCAAGGTTGTCACGCTTCTGTTTCGGCCGTTTGGTCCAACAAAGAAGATCCTTTCACCGTTGATTATTGCAGCCCCGATAAAATTGATTCCATGCACAAAGTTACACTTGAAGTAAAGGGAGAACCCCAGATCAAAAACTTGTCTGAGAAGCTTACAGCTGGTGGGATTATTCACAAACTGTGGATTGAACAACCTGAAAACATACCTACGTGCCTTGCCACAAAACCTTACCCCAAGTCAAGCGTTTCTTCGTATTTTAAGAAGTTGAAACTCTGTAAGTGATTTCATGTTTGATGTTTGCTTTTAATTTCCCTCTTGCTCCTATTTGGTAGAAAATGCATGAACTATGACTGGTAATTCGGGAATTTTTTTATTCTTTGCCTTCTCCCCTAAAAGTCACATTAGAGCAAATGAATGTTAAGTTTATTAACTATTTAAGCCCGATTTCTCTTTGACTTGAGAACATCAAGAGGAGGGGCGGGGGTATGTTTGGGGACAAAAATACCAAATGGGGTTCCTTTTACAAATTATTTACCTAAAAGAGTGTTTTGAAATTATTTATCCCGTGGGTCTGTTTTTTTACTACAATGCACCTCCCCGAGGGGCGCGTTCCCCGTAAAGGTGACACGTGGCATGGTGACAAATGACTTAGGAAGCACCCTGCGTACAAGCGTGATTGGTAGCGCTGCTGCAGCAGGCGCGTTGGGTCGCGCTGGGACCCCGGCGCGTCCAACTGGCCCGTGGTCCCCCTCCAAGCCACTCCTCCCCCAAGCAACAGCCAGTGCTTTTTGTTTTGTTTGAAGTTCATTAGCTGGCTGTTTGTTTCGTACAAGTTCAACAATCTTTATTTAGAAGAAAAAAAATTAAAATCTAAATCAGGTCATTGTCTCCCGAATTAAGTCAATGTCTCTTAATTGTCTTATAAGCTATTTAACACCTTTAATTTAAATTAATAAGAAAATTGTATTATATATGTAACAATTTGTTAATGATCACTACTAAACTTTACCTAATTAGAAATGCAACTTGTATTATATATGCAAA

>Glyma04g08040.5   sequence type=transcript   gene model=Glyma04g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGAAATGAATGTAAAATAAAATATAACATGACGTTGTTAGGTACTGCACTGTCTATCAGTGTGATTAGGGTTACACTTACCCATTTACGCGCGCCTTCTTTCTCCAACCGGGCGAGTCGACTCAGCTCCAACTCAATGAGTCAATCCGCCGCCACCGCCGACCCCAACGCTATTGCGACAACGAATGACGCGCCGTCGCAGCCTGAAAACGCGGATGTTGTGGTGCAGTACGTGGTGCTCCGGCGAGACCTGATCGACACTTGGCCGCTAGGGAGCGTGGTCACTCAAGGTTGTCACGCTTCTGTTTCGGCCGTTTGGTCCAACAAAGAAGATCCTTTCACCGTTGATTATTGCAGCCCCGATAAAATTGATTCCATGCACAAAGTTACACTTGAAGTAAAGGGAGAACCCCAGATCAAAAACTTGTCTGAGAAGCTTACAGCTGGTGGGATTATTCACAAACTGTGGATTGAACAACCTGAAAACATACCTACGTGCCTTGCCACAAAACCTTACCCCAAGTCAAGCGTTTCTTCGTATTTTAAGAAGTTGAAACTCTGGTGAAATCGTCGAAACACTGTATTTTATGGTGTCGTCTGTTGGGAGAAGGGTTTGTACTTTTGACGATTTACTGCCATGTACTGAGAAGATCACTCTTTTGTATGACGAAGAGGATAGGATACTTGAGGCACATGAAGATGCTCCCTCTTCTCAACCACAATTTGAACATCAACAGTTTAATATACTACAGCGAAGTGTGGAGACTCGAGGCTTAGTGCGATTTCAGGAAACTGTTGATTCAGCACTGTACAATTTCCCTCCGATGCCAGAACGACAATATGGAATGTATTACACATTGCCGGCATTCACCCAAGAACCGTCGTAGATGCCGTCGATATATTCTTACCCACATGATTTTCAACCAAGGTACAGTATGACAGACATATTTGGGTCATCTCCTCCTTCAACGGGAACTCCTTCATTTACCAAAGTGGTGAACTATCGAACTCAAATGCCCCACTTGGTGGTCCGTGAAACGTACCTGGAAATATACCCGACATGGATGACTTATTAGGGGTCGATTTATGTCATGATTTCTCTGTCGAGACTGACCAAGTGAATGTAAGGACGAATCATACAAAAAGAAATCTTGATAGGGCAGCTAGGAATTGGGACCGGCCATGTGGGACTTCGTCGTGACATCACAGACATAATGATGATTGATTAATAATGGATTTACATTTTTTTTTGCATGTTTTAACATTTTCATGTACTTTGTATTGTTTTTTTTTCCATGTTTTAACATTGTATGTATTTTGTATGGTTTTTTTCATGTTAATTTTATATTATTGCCACTTTAACGTTTCAATCTTATTGTGCAATGCTTTTAAAATAAATAACGATAATGTGAATGACACATAATTATAACCAATTATTAAGTTATAAAAAATTACTATTTTTTACAAAAAAAATATAAATAAAATTACTATTTCATTTTATCGTCTGTGTAATTTGCATATATAATACAATTTGCATTTCTAATTAGGTAAAGTTTAGTAGTGATCATCAACAAATTATTACATATATAATACAATTTTTTTATTAATTTAAATTAAACGTGTTAAATAGCTTATAAGACAATTAAGAGACATTAACTTTATTCGGGAGACAATGACTTGATTTAGATTTTAATTTTTTTTCTTCTAAATACAGATTGTTGAACTTGTCAAGTCTACAAAAGCTAATGAACTTCAAACGAAACAAAAAACACTGACTGTGGCTTGGGAAGGGGGAAGGAGTGGCTTGGAGGGGGGACCACGGGTCAGCTGGATGCGCCTGGGTCTCCAACGTGCCTGTTGCAGCAGCGCTACCCATCGCGTCTGCAGAGCGCTTTCTAAGTCATCTGCCACCCTGCCACGTGTTTTACCTTTACGGGGAACGCGCTCCTCAGGGAGACGCATTGTAATAAAAAAAGACCCACGGGATAAATAATTTTAAAATAGACCCATTTGGATAAATAATTTGTAAAAGAAATCCCATTTGATATTTTTGTCCTGGAAATAGGCCTTGTTTTCTTTTGACAAGTCAATTGTTGTTGTACTTTCTTTTGTTTGCATTTGAATTTTAGAGTACGACACATTTCCCAAATTAATATTATTATCTGAACTGATG

Coding sequences of Glyma04g08040

Limit To All Plant Sequences

>Glyma04g08040.2   sequence type=CDS   gene model=Glyma04g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTTGTTAGGTACTGCACTGTCTATCAGTGTGATTAGGGTTACACTTACCCATTTACGCGCGCCTTCTTTCTCCAACCGGGCGAGTCGACTCAGCTCCAACTCAATGAGTCAATCCGCCGCCACCGCCGACCCCAACGCTATTGCGACAACGAATGACGCGCCGTCGCAGCCTGAAAACGCGGATGTTGTGGTGCAGTACGTGGTGCTCCGGCGAGACCTGATCGACACTTGGCCGCTAGGGAGCGTGGTCACTCAAGGTTGTCACGCTTCTGTTTCGGCCGTTTGGTCCAACAAAGAAGATCCTTTCACCGTTGATTATTGCAGCCCCGATAAAATTGATTCCATGCACAAAGTTACACTTGAAGTAAAGGGAGAACCCCAGATCAAAAACTTGTCTGAGAAGCTTACAGCTGGTGGGATTATTCACAAACTGTGGATTGAACAACCTGAAAACATACCTACGTGCCTTGCCACAAAACCTTACCCCAAGTCAAGCGTTTCTTCGTATTTTAAGAAGTTGAAACTCTGTTATCCAAAAGAGCAGTTTCCCATGCATGTAAGTGCTGCATTCTCTAAGGTCTCTCAAAAATTGCAAATATCTCATTGA

>Glyma04g08040.3   sequence type=CDS   gene model=Glyma04g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTTGTTAGGTACTGCACTGTCTATCAGTGTGATTAGGGTTACACTTACCCATTTACGCGCGCCTTCTTTCTCCAACCGGGCGAGTCGACTCAGCTCCAACTCAATGAGTCAATCCGCCGCCACCGCCGACCCCAACGCTATTGCGACAACGAATGACGCGCCGTCGCAGCCTGAAAACGCGGATGTTGTGGTGCAGTACGTGGTGCTCCGGCGAGACCTGATCGACACTTGGCCGCTAGGGAGCGTGGTCACTCAAGGTTGTCACGCTTCTGTTTCGGCCGTTTGGTCCAACAAAGAAGATCCTTTCACCGTTGATTATTGCAGCCCCGATAAAATTGATTCCATGCACAAAGTTACACTTGAAGTAAAGGGAGAACCCCAGATCAAAAACTTGTCTGAGAAGCTTACAGCTGGTGGGATTATTCACAAACTGTGGATTGAACAACCTGAAAACATACCTACGTGCCTTGCCACAAAACCTTACCCCAAGTCAAGCGTTTCTTCGTATTTTAAGAAGTTGAAACTCTATTGTTGA

>Glyma04g08040.4   sequence type=CDS   gene model=Glyma04g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTTGTTAGGTACTGCACTGTCTATCAGTGTGATTAGGGTTACACTTACCCATTTACGCGCGCCTTCTTTCTCCAACCGGGCGAGTCGACTCAGCTCCAACTCAATGAGTCAATCCGCCGCCACCGCCGACCCCAACGCTATTGCGACAACGAATGACGCGCCGTCGCAGCCTGAAAACGCGGATGTTGTGGTGCAGTACGTGGTGCTCCGGCGAGACCTGATCGACACTTGGCCGCTAGGGAGCGTGGTCACTCAAGGTTGTCACGCTTCTGTTTCGGCCGTTTGGTCCAACAAAGAAGATCCTTTCACCGTTGATTATTGCAGCCCCGATAAAATTGATTCCATGCACAAAGTTACACTTGAAGTAAAGGGAGAACCCCAGATCAAAAACTTGTCTGAGAAGCTTACAGCTGGTGGGATTATTCACAAACTGTGGATTGAACAACCTGAAAACATACCTACGTGCCTTGCCACAAAACCTTACCCCAAGTCAAGCGTTTCTTCGTATTTTAAGAAGTTGAAACTCTGTAAGTGA

>Glyma04g08040.5   sequence type=CDS   gene model=Glyma04g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTTGTTAGGTACTGCACTGTCTATCAGTGTGATTAGGGTTACACTTACCCATTTACGCGCGCCTTCTTTCTCCAACCGGGCGAGTCGACTCAGCTCCAACTCAATGAGTCAATCCGCCGCCACCGCCGACCCCAACGCTATTGCGACAACGAATGACGCGCCGTCGCAGCCTGAAAACGCGGATGTTGTGGTGCAGTACGTGGTGCTCCGGCGAGACCTGATCGACACTTGGCCGCTAGGGAGCGTGGTCACTCAAGGTTGTCACGCTTCTGTTTCGGCCGTTTGGTCCAACAAAGAAGATCCTTTCACCGTTGATTATTGCAGCCCCGATAAAATTGATTCCATGCACAAAGTTACACTTGAAGTAAAGGGAGAACCCCAGATCAAAAACTTGTCTGAGAAGCTTACAGCTGGTGGGATTATTCACAAACTGTGGATTGAACAACCTGAAAACATACCTACGTGCCTTGCCACAAAACCTTACCCCAAGTCAAGCGTTTCTTCGTATTTTAAGAAGTTGAAACTCTGGTGA

Predicted protein sequences of Glyma04g08040

Limit To All Plant Sequences

>Glyma04g08040.2   sequence type=predicted peptide   gene model=Glyma04g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLLGTALSISVIRVTLTHLRAPSFSNRASRLSSNSMSQSAATADPNAIATTNDAPSQPENADVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWSNKEDPFTVDYCSPDKIDSMHKVTLEVKGEPQIKNLSEKLTAGGIIHKLWIEQPENIPTCLATKPYPKSSVSSYFKKLKLCYPKEQFPMHVSAAFSKVSQKLQISH*

>Glyma04g08040.3   sequence type=predicted peptide   gene model=Glyma04g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLLGTALSISVIRVTLTHLRAPSFSNRASRLSSNSMSQSAATADPNAIATTNDAPSQPENADVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWSNKEDPFTVDYCSPDKIDSMHKVTLEVKGEPQIKNLSEKLTAGGIIHKLWIEQPENIPTCLATKPYPKSSVSSYFKKLKLYC*

>Glyma04g08040.4   sequence type=predicted peptide   gene model=Glyma04g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLLGTALSISVIRVTLTHLRAPSFSNRASRLSSNSMSQSAATADPNAIATTNDAPSQPENADVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWSNKEDPFTVDYCSPDKIDSMHKVTLEVKGEPQIKNLSEKLTAGGIIHKLWIEQPENIPTCLATKPYPKSSVSSYFKKLKLCK*

>Glyma04g08040.5   sequence type=predicted peptide   gene model=Glyma04g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLLGTALSISVIRVTLTHLRAPSFSNRASRLSSNSMSQSAATADPNAIATTNDAPSQPENADVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWSNKEDPFTVDYCSPDKIDSMHKVTLEVKGEPQIKNLSEKLTAGGIIHKLWIEQPENIPTCLATKPYPKSSVSSYFKKLKLW*

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