Glyma04g08000 - SoyBase

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Report for Sequence Feature Glyma04g08000

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6262886
stop:	6264385
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24540	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr2:10426414-10427532 FORWARD LENGTH=372	SoyBase	E_val: 9.00E-95	ISS
GO:0009585	GO-bp	Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010017	GO-bp	Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0010264	GO-bp	Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR24414	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24414:SF184	Panther		JGI		ISS
UniRef100_G7JCD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box protein AFR n=1 Tax=Medicago truncatula RepID=G7JCD6_MEDTR	SoyBase	E_val: 3.00E-112	ISS
UniRef100_I1JUM8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUM8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g08000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08000

Paralog	Evidence	Comments
Glyma06g08050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g075700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08000

Limit To All Plant Sequences

>Glyma04g08000.1   sequence type=CDS   gene model=Glyma04g08000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGGCTGTGGGAGACGAAAAGGAGCAGGAGGAGCTTATTCCTGGCTTACCCTACGAAATTGCAGAGCTGTGTCTTCTTCACGTTCCGTACCCTTACCAAGCTTTGTCGCGCTCTGTTCGTCGACGTGGAACAGAGCAATAACGCACCCTTCTTTTATTTTCTCCAAGAAGACCCTCTCCCGTCCTCACCTCTTCGTTCTCGCGTTTCATTCACAAACTGGGAAAATCCAGTGGCAGGCGCTCGACCCTTCCTCGGGGCGCTGGTTCGTTTTACCGCAGATGCCCTTGCAGGAAAACTCCTGCCCCACGGAGTTCGCGTGCGCGGCGCTGCCGCACCAGGGGAAGCTCTTCGTCATGGCCGGCGGCGGCGGCGGTTCAGACACCCTCGTCTACCGCGCCGCCACGAACCAGTGGGCTCTGGCGGCGCCCATGCCGGGAGGGAGGAAGAGGGGCTTCTTCGCGGCGGAGGGAGTGGAGGGAAAGATCGTAGCAGTCGGGAGAAGCGGCACGGACATCTACGATCCGGAGAGCGACACGTGGCGGGAGGGGAAGAAGCAGGGGGGGGAGCTGAAGAGGTACGAGGTTGTGGCGGCGGGAGGGAAGGTGTACGTGAGCGAGGGGTGGTGGTGGCCGTTCATGTACCGTCCACGGGGGTGGGTGTACGAAACGGAGAAGGACACGTGGCGGGAGATGGGGGTTGGAATGAGGGACGGTTGGAGCGGGGTGAGTGTGGCGGTGGGGGGAAGGGTTTTCGTGATAGCGGAATACGGGGACGCGCCGGTTAGGGTGTACGACGAGGAGCAGGACACGTGGCGCTACGTGAAAGGAGGGAGCTTTCCGAGGGACGTTATAAAGAGACCGTTTTTGGCGACGGGTTTGGACAACAGAATCTACGTGGCATCGTACAATTTAAACGTTGCAATTGGAAAGATGAAGAGTGATAGAATCCAAGGGAAAGGTGATTTTGAGGTTAGTGTGACGTGGGAGGTTGTGGAGGCGCCGTCTGCTTTCCGCGAATTCTCACCTTGTACTTGTCAAGTGCTCTATGCTTGA

Predicted protein sequences of Glyma04g08000

Limit To All Plant Sequences

>Glyma04g08000.1   sequence type=predicted peptide   gene model=Glyma04g08000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGCGRRKGAGGAYSWLTLRNCRAVSSSRSVPLPSFVALCSSTWNRAITHPSFIFSKKTLSRPHLFVLAFHSQTGKIQWQALDPSSGRWFVLPQMPLQENSCPTEFACAALPHQGKLFVMAGGGGGSDTLVYRAATNQWALAAPMPGGRKRGFFAAEGVEGKIVAVGRSGTDIYDPESDTWREGKKQGGELKRYEVVAAGGKVYVSEGWWWPFMYRPRGWVYETEKDTWREMGVGMRDGWSGVSVAVGGRVFVIAEYGDAPVRVYDEEQDTWRYVKGGSFPRDVIKRPFLATGLDNRIYVASYNLNVAIGKMKSDRIQGKGDFEVSVTWEVVEAPSAFREFSPCTCQVLYA*

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