Glyma04g07990 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g07990

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6251997
stop:	6253614
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_B9RNM0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RNM0_RICCO	SoyBase	E_val: 4.00E-17	ISS
UniRef100_I1JUM7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUM7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07990

Paralog	Evidence	Comments
Glyma06g08040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g075500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07990

Limit To All Plant Sequences

>Glyma04g07990.1   sequence type=CDS   gene model=Glyma04g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACAAAAACAGAAGACACTAGTGTGGTTGGGAAGGAGAAGAAGGCCCCATCTTCAAATTCTCCCATGACAACCACCAAAAAGACCCCAACCAAGGCACCATCCACAACAAAGAAGGCCACCTCAAGCCCATCAGAGAAACAAGTCCCAAACTATCTCAAGCCCACAATCAGCTCAGGCCTTGATTCTCACTCCTCTTTCAAGCTCCCTAGGAATAATGATGGTCCCACCAAGCCCACTCTAAATAGAAGAAGATCTCTTGACCCATCTTCATCTTCATCTTCAAGGTTACCGAAACAAACACATACACCTTCTCTTTCAAGACAACACAAGGCCCTTGTGTCCCCTGGGCCACGCGAAAGAACACTGCCACTTCGATCTTCTAGTGTTCCTATTAAAACTACTAACAACGCTTCAAAACCCATTCCAGAGAGGCTCTCAAGGACCCCAAAGGAAGGGAGAACACAACCACTGAGTGCCAAGAAGAGCCCCAACAAAGTTTTTGCTTCAACTAGTAAGAAGGTAATGAGTAATGATGCTTCTTCTAACTCATCCAACGTTTCAAAGAGTGGTGGTATTAATGAATCAGAAGTTGAAGAAGCTGTAAATGAAGAGCAGGTTGGAGAAGTGGAAAATGTGGATAATCATGAAGAACTCCCACGTCAAGTAGTTGACTCTGAACATGAACATCTTGATCAAAAGCTTGAGGAGTCTGATCAACCTCATGTTCAAGATGATGATGAGAAGGGCATTCCTACAGTGCTAGAAGAAAAAGAGGACGAGAATACAAACCAATATGAGTGCAACATTAATGAAAGTCATCCAAAAATTGATCATTCAACAACTGAAGAAGTTGAGTTGAAACAAGAAGAACAAGAACAAGAAGAAGGTGGGGTTGTTCACAAAAGTGAGACCAACAATGAGGAAGAGGTAGTGGAAGAGAAGGAAGGAGTTGAAAAAGTAATAAGTGAGGAGGTTAAAGAGTTGAGGGAAGGACAAGGTGAAGATGAACAAGTAGAGAGTGAAGTTAAAGAAGAAAAGGTTGAGTCACCAAAGCCAAAACAAGTAGAAGAAGGAGGTTGGATGCAAGAGAAGAAAGAGGTTCAGTCTCCAGTATCCAATGATGTGATCGAAGAGAATGCAGGGAAGCAATTAGAAGCGAGGAGGAATAAAGTGAGAGCATTGGCTGGTGCATTCCAGAATGTCATTGACCATCAAAAAAACAAGTGA

Predicted protein sequences of Glyma04g07990

Limit To All Plant Sequences

>Glyma04g07990.1   sequence type=predicted peptide   gene model=Glyma04g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATKTEDTSVVGKEKKAPSSNSPMTTTKKTPTKAPSTTKKATSSPSEKQVPNYLKPTISSGLDSHSSFKLPRNNDGPTKPTLNRRRSLDPSSSSSSRLPKQTHTPSLSRQHKALVSPGPRERTLPLRSSSVPIKTTNNASKPIPERLSRTPKEGRTQPLSAKKSPNKVFASTSKKVMSNDASSNSSNVSKSGGINESEVEEAVNEEQVGEVENVDNHEELPRQVVDSEHEHLDQKLEESDQPHVQDDDEKGIPTVLEEKEDENTNQYECNINESHPKIDHSTTEEVELKQEEQEQEEGGVVHKSETNNEEEVVEEKEGVEKVISEEVKELREGQGEDEQVESEVKEEKVESPKPKQVEEGGWMQEKKEVQSPVSNDVIEENAGKQLEARRNKVRALAGAFQNVIDHQKNK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain