Glyma04g07980 - SoyBase

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Report for Sequence Feature Glyma04g07980

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6238177
stop:	6242683
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24870	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:8545008-8546923 REVERSE LENGTH=520	SoyBase	E_val: 1.00E-117	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PTHR14155:SF28	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_B9RNL9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RNL9_RICCO	SoyBase	E_val: 7.00E-180	ISS
UniRef100_UPI000233935A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233935A related cluster n=1 Tax=unknown RepID=UPI000233935A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07980

Paralog	Evidence	Comments
Glyma06g08030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g075400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07980

Limit To All Plant Sequences

>Glyma04g07980.1   sequence type=CDS   gene model=Glyma04g07980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAATATTCTGCTAAAAGAGCCACTGATGGGGTGGTAGTCCCTAGAAAGGGGATACGCCATGCATTTAGAGATACTGCTAACGCCAGAGATCAAAATGGTCAGGTGTGCAGCCGCATTACTTGTAGTAGCAGAGTCAATACTCCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGTAAATCTTTGAAACCTTCAATCCAATCTTCTTCAGCTGGCAAGGAAGCAATTGGAAGCTCCTCTAGAACATTTTTCAAGACTAATAGCCCAGGAAAACCGCTTATAAAGCCACGGAAATCACCATCATCTCAGTTAGAGACAGATTCATCTGAAATTAGTAGTGTACAGGATGATTCAGAAGTTTCAAAACTCGCCCCTCCCCCTGAAAAAAGTCAGACAAATGTTCAAGCTGAATTGGAAAATACAGTGTCTGGTAATGCCATGATGGAAGTAGGAAGCTCTAGTGTAGTATCCAATACAAGATCTCGGAGGAATTTTCATCCAAAGCCTGGATTAAGGGGCCAAGAAATTAAAAGCACTGGTCCAGTGACACGTGCTGGTACCAGTAGGTATGGATTGAGGAACCTCAAATGCAACACTATTTCTGATGTCATCCCTGCTGGTTGTTCACCTTCAGATTCAACCCTTAACAGAAAGAAGGATGTCATAAAAAAGAGAAATTGTGAAGGGGAAGGTAGTTCCACTGGTAGAGGGAAGAAAATGAGCGGGTCTTCATTAGAAGCACGAAATTCTGGCTCCAGAAATGGCATATCTATCTCTGATTCAAGAATATCTAGGAATACTCCTCACAGGGACAGGTCAGACAGCAACATGGCACCAGTTAGAACTCGAAAATTGATTAGTGGTCGTACCAGGGGAAGGCTTTCTAGCCAAGGAAATGCCAATCCCATGCCACCTAATGAGTCCCTTGTCAAGATACCTGATTTGCCCCGTTCTGGTGGTCTTAATATTCCTGGTGTATCACGTCATACTTCTGTAGATAGTCCCTTAAGTTGTCCTAGCTCTCATAGTAGACCAGTTACTGGCAGTGAGGAGTTATATGGTGTTATGCCTGTATCTCCTTCAGAGTATGGCCTCACTCATTCTCTAATGAATCTGGATAGCTTTCGACGACGTTACAACATGGATAGTATTGCAGAGGTATTGGTGGCACTTGATAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTAACTGGACTAAACTTCTACGATCCACATAGAGACATGCGATTGGACATTGATAACATGTCGTATGAGCAACTGCTGGCTTTGGAAGAGAGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAACACTATCAGAATGCCTAAAGAAAAGTTTCTACCAGTCCCCACCCTCTGAAAATGCAGCTGAGAGTTGCAATGAACATAAGGATGATACCAAATGCAGCATTTGCCAGGAGGAATATGTGGCTGCAGATGAAGTGGGGAGTCTGCAATGCGAGCATGCGTATCATGTGGCTTGCATACAGCAGTGGCTACAGCTAAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACCGTCAAATTCATCACCATCCCAATGA

Predicted protein sequences of Glyma04g07980

Limit To All Plant Sequences

>Glyma04g07980.1   sequence type=predicted peptide   gene model=Glyma04g07980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEYSAKRATDGVVVPRKGIRHAFRDTANARDQNGQVCSRITCSSRVNTPKGAQIGSSEKGKSLKPSIQSSSAGKEAIGSSSRTFFKTNSPGKPLIKPRKSPSSQLETDSSEISSVQDDSEVSKLAPPPEKSQTNVQAELENTVSGNAMMEVGSSSVVSNTRSRRNFHPKPGLRGQEIKSTGPVTRAGTSRYGLRNLKCNTISDVIPAGCSPSDSTLNRKKDVIKKRNCEGEGSSTGRGKKMSGSSLEARNSGSRNGISISDSRISRNTPHRDRSDSNMAPVRTRKLISGRTRGRLSSQGNANPMPPNESLVKIPDLPRSGGLNIPGVSRHTSVDSPLSCPSSHSRPVTGSEELYGVMPVSPSEYGLTHSLMNLDSFRRRYNMDSIAEVLVALDRIEQDVELTHEQIRLLESNLFLTGLNFYDPHRDMRLDIDNMSYEQLLALEERMGTVSTALTEETLSECLKKSFYQSPPSENAAESCNEHKDDTKCSICQEEYVAADEVGSLQCEHAYHVACIQQWLQLKNWCPICKASVAPSNSSPSQ*

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