Glyma04g07970 - SoyBase

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Report for Sequence Feature Glyma04g07970

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6231641
stop:	6234599
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24530	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr2:10422597-10423820 FORWARD LENGTH=407	SoyBase	E_val: 3.00E-137	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JUM5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUM5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q01HY7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0132E09-OSIGBa0108L24.2 protein n=2 Tax=Oryza sativa RepID=Q01HY7_ORYSA	SoyBase	E_val: 2.00E-73	ISS

Expression Patterns of Glyma04g07970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07970

Paralog	Evidence	Comments
Glyma06g08020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g075300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07970

Limit To All Plant Sequences

>Glyma04g07970.1   sequence type=CDS   gene model=Glyma04g07970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACCCCAGCAGAGCTCAAGAATTGATTTGGGTGAATTGAGAGCACAGATTGTAAAGAAGCTTGGAGCGGATAAGTCGAAGCGTTACTTTTATTACTTGAACAGGTTTTTGAGTCAGAAGTTGAGCAAGACTGAGTTTGATAAGTTATGTTTTCGAGTTCTTGGGAGGGAGAATCTTCCATTGCACAACCATTTTATAAAGTCAATTTTGAAGAATGCCTGTCAAGCCAAGACCCCACCACCAATCCATCCGCCAGATCCCCTGAAGTCTGGAGAACATGCTTCAGACATGTCTCCTGGCAGGGAAGATGGGCATGAACACAGTGTTGCCAGCTTCCAAAATCAAAGTCAGAAAGCACCCGTTTGGTCAAATGGGTTTTTGCCGGCATCCCCTAAGGTTAGGTCTGGAGTACGTGAACGGAAGCTGAGAGATAGGCCAAGCCCTCTTGGACCAAATGGGAAGGTTGATTCTGTTTCTCACCAAATCATGGGTACAGAAGACTGTGGTAGTAAGGTTGACATGGAGAATGGAATTCGTTCTCCATGTGATTACCAGAGACCAATACAGCATCTTCAAGCTGTTGCTGAGCTACCTGAGAATGAAAGGGGAGATGTTGTTCAGAAACCTGCAGAAAAACCAAGAATACACGGGAAAGGGCCGGCTGAAATGTCAATTGTTGAAGACGGGGAAGAAGTGGATCAGTTAAGTCGCCTGGGTTTCTCTAGAAGTCCCTTGATAGCACCACTTGGGATTCCTTACTGCTCAGCAAGTGTAGGGGGAGCCCGCAAAACATTGCCAGTGAGTAGTGCTGGTGATTTTGATAGCTGTTGTGACAGTGGTAGGTTGTCTGATACAGATACACTGCGGAGGCGCATGGAGCAGATTGCTGCAGTACAAGGTCTTGGAGCTGTTTCTATGGAATGTGCAAATATGTTGAATAGTATGTTGGATGTGTACTTGAAACGGTTGATCAGGTCCTGTGTTGAATTAGTTGGAACTAGGTCTACAAATGAGCTGAGGAAGCCCCTTGCCCCCAAACAGCAGATGCAGGGTAAGGTCATCAACGACATGTGGCCAAATAATCATTTACATGTGCAGTGTGCTGGTGGGTCAGCAGAAGCTGTGCCTGAACACAGACCACCATGCTCAGTTTCTTTGCATGATTTTAAAGTTGCCATGGAACTAAATCCACGGCAACTTGGAGAAGATTGCCCTCTGCTATTGGAGAAAATATCCATGCAATCGTTTGAGGAATAA

Predicted protein sequences of Glyma04g07970

Limit To All Plant Sequences

>Glyma04g07970.1   sequence type=predicted peptide   gene model=Glyma04g07970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQPQQSSRIDLGELRAQIVKKLGADKSKRYFYYLNRFLSQKLSKTEFDKLCFRVLGRENLPLHNHFIKSILKNACQAKTPPPIHPPDPLKSGEHASDMSPGREDGHEHSVASFQNQSQKAPVWSNGFLPASPKVRSGVRERKLRDRPSPLGPNGKVDSVSHQIMGTEDCGSKVDMENGIRSPCDYQRPIQHLQAVAELPENERGDVVQKPAEKPRIHGKGPAEMSIVEDGEEVDQLSRLGFSRSPLIAPLGIPYCSASVGGARKTLPVSSAGDFDSCCDSGRLSDTDTLRRRMEQIAAVQGLGAVSMECANMLNSMLDVYLKRLIRSCVELVGTRSTNELRKPLAPKQQMQGKVINDMWPNNHLHVQCAGGSAEAVPEHRPPCSVSLHDFKVAMELNPRQLGEDCPLLLEKISMQSFEE*

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