Glyma04g07960 - SoyBase

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Report for Sequence Feature Glyma04g07960

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6219884
stop:	6227945
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10710	AT	Annotation by Michelle Graham. TAIR10: INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:3379619-3382648 FORWARD LENGTH=312	SoyBase	E_val: 7.00E-144	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0007059	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromosome segregation	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0000775	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chromosome, centromeric region	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF09496	PFAM	Cenp-O kinetochore centromere component	JGI		ISS
UniRef100_I1JUM3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUM3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q01LX6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0145C02.4 protein n=3 Tax=Oryza sativa RepID=Q01LX6_ORYSA	SoyBase	E_val: 5.00E-147	ISS

Expression Patterns of Glyma04g07960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07960

Paralog	Evidence	Comments
Glyma06g08010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g075200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g07960

Limit To All Plant Sequences

>Glyma04g07960.2   sequence type=transcript   gene model=Glyma04g07960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGGCACTCACACTTATAGTGTCACACCAATTCGCGCATTGGAAGAAGGCATCACCGCGTTGTGTTGTGATTGAAAATGGAGAGCGATGTCGAAGAATCTCTGCGGAAGAGGCCCAGAAAATACCCTTTCTCCGCCGATTCATCTTCTCGCAAGCAATTTGAACAATATTCTGGACGGACATTTGCATTTACGGGGGAAGTGAATTTTATGCAAGATGATGATAATCGTCTGGAGATTACCCGAACTAAATTTGGAAGTTTGCTTAAAAGACACGGAGATTTGACAGAGCGTCTTGCTAGGGATTCTGACAAGATAATATTTGAGCGTCTACAGAAGGAGTTTGAAGCTGCACGAGCTTCTCAAACTGAAGAGATATGTTTAGACGGGGAAGAGTGGAATGATGGACTACTAGCTACAATAAGAGAGCGGGTGCATATGGAGGCAGACAGAAAAGCAATGCATGGGGATGCTGACATATTAGCATGTCCTCAGGATAAAATTACATATAAAATTGGAAACAAGGTAATTTGCTGTTTGGAAGGGGCAAGAATTGGTGTACAATATGAGACATCTTTTGCTGGTGAACCTTGTGAGTTTTACCATTGTGTGCTGGAGAGTAAGTCATTTCTTGAAAAGATGACTGTCCTTGAACATACAGTTCCATTTTTCCTGCCAATACGAGAAATAGAAAATGATCTCCTTTCATCCAATGCAATGAAATTCATAGATCATGTTGGAGATCTATTGCAGGCTTTTGTGGATAGACGGGAACAGGTCAGACTTATAAAGGAGCTGTATGGAAATCAAATTAGAGAGCTGTATCATAGCCTTCCCTACCATATGATCGAATTTGTATTGGATGATTCTGATTGCAAGGTGACAGTCAGCCTTAGATATGCAGATCTCATTTCGGTGCTTCCAACTCGAATTTCAGTGCTAGCCTGGCCTATGTTCAATAAAAATACTATGGCTACTTTGAGCAGGAAGGAAGATGGACTCTCAGGAAGTCATTCTTCTCCAATTCGCTTAACCTATGCAGAAGATGCCTTACGAACCATGAGTTTACCTGAAGCATATGCAGAGATTGTATTAAACTTACCACAGGCGCTTCAGCAGACGTATCATCAAAAAGCCCCTGCTTAGAGCTTCGCCCTTTGAGTAGCCTAGATGCATCAGTAAAAATTCTTGGTAGAGATGTTAAATATTAGATAAACAACTTCAGAATTATTACCTATTCACCTAGCCAAATTGCTCATAGGTTGAGTTCATTTTGCTGTAATATTGTCATATAGCATTTAGCATTTGTATTTCGGCCTCTCTGGCCTCGTTATTCCTTCAATACCTGCTACGGTGTCTTGTATCATTAATACAACAGGGCTAGGTTTACATCTATTCAAACTGTTGTCATTCATCTTTTCTCCATAATTCAACATGTATGTAATTTGATTTCATATAAGTTCCATCTTTTTTACATGGCAAGCAAAAATAGCAAGTATGAAGGCATGATCATTTGCTAATCGTTTAAATTTGAGATAAGAATAAATGATACTTCATTTTGTAGTAAAT

Coding sequences of Glyma04g07960

Limit To All Plant Sequences

>Glyma04g07960.1   sequence type=CDS   gene model=Glyma04g07960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGCGATGTCGAAGAATCTCTGCGGAAGAGGCCCAGAAAATACCCTTTCTCCGCCGATTCATCTTCTCGCAAGCAATTTGAACAATATTCTGGACGGACATTTGCATTTACGGGGGAAGTGAATTTTATGCAAGATGATGATAATCGTCTGGAGATTACCCGAACTAAATTTGGAAGTTTGCTTAAAAGACACGGAGATTTGACAGAGCGTCTTGCTAGGGATTCTGACAAGATAATATTTGAGCGTCTACAGAAGGAGTTTGAAGCTGCACGAGCTTCTCAAACTGAAGAGATATGTTTAGACGGGGAAGAGTGGAATGATGGACTACTAGCTACAATAAGAGAGCGGGTGCATATGGAGGCAGACAGAAAAGCAATGCATGGGGATGCTGACATATTAGCATGTCCTCAGGATAAAATTACATATAAAATTGGAAACAAGCAGGTAATTTGCTGTTTGGAAGGGGCAAGAATTGGTGTACAATATGAGACATCTTTTGCTGGTGAACCTTGTGAGTTTTACCATTGTGTGCTGGAGAGTAAGTCATTTCTTGAAAAGATGACTGTCCTTGAACATACAGTTCCATTTTTCCTGCCAATACGAGAAATAGAAAATGATCTCCTTTCATCCAATGCAATGAAATTCATAGATCATGTTGGAGATCTATTGCAGGCTTTTGTGGATAGACGGGAACAGGTCAGACTTATAAAGGAGCTGTATGGAAATCAAATTAGAGAGCTGTATCATAGCCTTCCCTACCATATGATCGAATTTGTATTGGATGATTCTGATTGCAAGGTGACAGTCAGCCTTAGATATGCAGATCTCATTTCGGTGCTTCCAACTCGAATTTCAGTGCTAGCCTGGCCTATGTTCAATAAAAATACTATGGCTACTTTGAGCAGGAAGGAAGATGGACTCTCAGGAAGTCATTCTTCTCCAATTCGCTTAACCTATGCAGAAGATGCCTTACGAACCATGAGTTTACCTGAAGCATATGCAGAGATTGTATTAAACTTACCACAGGCGCTTCAGCAGACGTATCATCAAAAAGCCCCTGCTTAG

>Glyma04g07960.2   sequence type=CDS   gene model=Glyma04g07960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGCGATGTCGAAGAATCTCTGCGGAAGAGGCCCAGAAAATACCCTTTCTCCGCCGATTCATCTTCTCGCAAGCAATTTGAACAATATTCTGGACGGACATTTGCATTTACGGGGGAAGTGAATTTTATGCAAGATGATGATAATCGTCTGGAGATTACCCGAACTAAATTTGGAAGTTTGCTTAAAAGACACGGAGATTTGACAGAGCGTCTTGCTAGGGATTCTGACAAGATAATATTTGAGCGTCTACAGAAGGAGTTTGAAGCTGCACGAGCTTCTCAAACTGAAGAGATATGTTTAGACGGGGAAGAGTGGAATGATGGACTACTAGCTACAATAAGAGAGCGGGTGCATATGGAGGCAGACAGAAAAGCAATGCATGGGGATGCTGACATATTAGCATGTCCTCAGGATAAAATTACATATAAAATTGGAAACAAGGTAATTTGCTGTTTGGAAGGGGCAAGAATTGGTGTACAATATGAGACATCTTTTGCTGGTGAACCTTGTGAGTTTTACCATTGTGTGCTGGAGAGTAAGTCATTTCTTGAAAAGATGACTGTCCTTGAACATACAGTTCCATTTTTCCTGCCAATACGAGAAATAGAAAATGATCTCCTTTCATCCAATGCAATGAAATTCATAGATCATGTTGGAGATCTATTGCAGGCTTTTGTGGATAGACGGGAACAGGTCAGACTTATAAAGGAGCTGTATGGAAATCAAATTAGAGAGCTGTATCATAGCCTTCCCTACCATATGATCGAATTTGTATTGGATGATTCTGATTGCAAGGTGACAGTCAGCCTTAGATATGCAGATCTCATTTCGGTGCTTCCAACTCGAATTTCAGTGCTAGCCTGGCCTATGTTCAATAAAAATACTATGGCTACTTTGAGCAGGAAGGAAGATGGACTCTCAGGAAGTCATTCTTCTCCAATTCGCTTAACCTATGCAGAAGATGCCTTACGAACCATGAGTTTACCTGAAGCATATGCAGAGATTGTATTAAACTTACCACAGGCGCTTCAGCAGACGTATCATCAAAAAGCCCCTGCTTAG

Predicted protein sequences of Glyma04g07960

Limit To All Plant Sequences

>Glyma04g07960.1   sequence type=predicted peptide   gene model=Glyma04g07960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESDVEESLRKRPRKYPFSADSSSRKQFEQYSGRTFAFTGEVNFMQDDDNRLEITRTKFGSLLKRHGDLTERLARDSDKIIFERLQKEFEAARASQTEEICLDGEEWNDGLLATIRERVHMEADRKAMHGDADILACPQDKITYKIGNKQVICCLEGARIGVQYETSFAGEPCEFYHCVLESKSFLEKMTVLEHTVPFFLPIREIENDLLSSNAMKFIDHVGDLLQAFVDRREQVRLIKELYGNQIRELYHSLPYHMIEFVLDDSDCKVTVSLRYADLISVLPTRISVLAWPMFNKNTMATLSRKEDGLSGSHSSPIRLTYAEDALRTMSLPEAYAEIVLNLPQALQQTYHQKAPA*

>Glyma04g07960.2   sequence type=predicted peptide   gene model=Glyma04g07960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESDVEESLRKRPRKYPFSADSSSRKQFEQYSGRTFAFTGEVNFMQDDDNRLEITRTKFGSLLKRHGDLTERLARDSDKIIFERLQKEFEAARASQTEEICLDGEEWNDGLLATIRERVHMEADRKAMHGDADILACPQDKITYKIGNKVICCLEGARIGVQYETSFAGEPCEFYHCVLESKSFLEKMTVLEHTVPFFLPIREIENDLLSSNAMKFIDHVGDLLQAFVDRREQVRLIKELYGNQIRELYHSLPYHMIEFVLDDSDCKVTVSLRYADLISVLPTRISVLAWPMFNKNTMATLSRKEDGLSGSHSSPIRLTYAEDALRTMSLPEAYAEIVLNLPQALQQTYHQKAPA*

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