Glyma04g07940 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g07940

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6195663
stop:	6201246
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71230	AT	Annotation by Michelle Graham. TAIR10: COP9-signalosome 5B \| chr1:26852560-26854255 FORWARD LENGTH=358	SoyBase	E_val: 0	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0000338	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deneddylation	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0010100	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of photomorphogenesis	SoyBase	N/A	ISS
GO:0010387	GO-bp	Annotation by Michelle Graham. GO Biological Process: signalosome assembly	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008180	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: signalosome	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1554	KOG	COP9 signalosome, subunit CSN5	JGI		ISS
PTHR10410	Panther	JUN ACTIVATION DOMAIN BINDING PROTEIN	JGI		ISS
PTHR10410:SF6	Panther	JUN ACTIVATION DOMAIN BINDING PROTEIN	JGI		ISS
PF01398	PFAM	Mov34/MPN/PAD-1 family	JGI		ISS
UniRef100_B9SPP1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Jun activation domain binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPP1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00019D345A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00019D345A related cluster n=1 Tax=unknown RepID=UPI00019D345A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07940

Paralog	Evidence	Comments
Glyma06g07980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g075000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07940

Limit To All Plant Sequences

>Glyma04g07940.1   sequence type=CDS   gene model=Glyma04g07940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGGCAAAGAAATGGAAGGGTTGTCGTCTTCGTCGGCGATCGCGCAGAAAACATGGGAACTCGAGAACAACATCATCCCGATGGACACTCCGGGCGGCGCCGCCATCTCCTCCACAACCACCACGACAAGCGCCGACGACTCGATCTTCTACTACGACGAGGCGGGCCAGAACGAGTTCCAGCGCGACAAGCCCTGGGCCAACGACCCCCACTACTTCAAGCGCGTGAAGATCTCCGCACTCGCGCTCCTCAAGATGGTCGTCCACGCGCGCTCCGGCGGCACCATCGAGGTCATGGGCCTCATGCAGGGCAAGACCGACGCCGACGCCATCATCGTCATGGACGCCTTCGCCCTCCCCGTCGAAGGCACTGAGACTCGCGTCAATGCCCAGGCCGATGCGTACGAGTACATGGTCGATTATTCACAGACAAACAAACAGGCAGGGCGGTTGGAGAATGTAGTGGGATGGTATCACTCTCACCCTGGTTATGGTTGCTGGCTGTCGGGGATCGATGTTTCGACGCAGATGCTGAATCAGCAGTTTCAGGAGCCGTTTCTGGCGGTTGTGATTGACCCGACGAGGACCGTTTCGGCGGGGAAAGTTGAGATTGGGGCTTTCAGGACTTACCCTGAAGGGTATAAGCCTCCGGATGAGCCTGTTTCTGAGTACCAGACCATTCCTCTTAATAAGATTGAGGACTTTGGTGTTCACTGTAAACAGTATTATGCATTGGACATCACTTACTTTAAGTCGTCTCTTGATTCACACCTCTTGGACCTGCTGTGGAACAAGTATTGGGTGAATACACTGTCGTCTTCTCCTCTGTTGGGTAATGGAGATTATGTTGCTGGACAAATCTCTGATTTAGCTGAGAAGCTAGAACAAGCAGAGAATCAGTTGGCACACTCACGCTTTGGGCCACTAATAGCACCCACACCTAGAAAGAAAGAGGAGGAATCTCCACTTGCTAAGATTACTCGTGACAGTGCAAAAATAACTGTGGAGCAAGTGCATGGTCTAATGTCACAGGTTATTAAGGACATTCTGTTTAACTCCGTCCATCAAGCAAACAGAACTCGCACAGAAGCATCTGGTCCCGAACCAATGATTGAAAGCTGA

Predicted protein sequences of Glyma04g07940

Limit To All Plant Sequences

>Glyma04g07940.1   sequence type=predicted peptide   gene model=Glyma04g07940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGKEMEGLSSSSAIAQKTWELENNIIPMDTPGGAAISSTTTTTSADDSIFYYDEAGQNEFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPVSEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPTPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANRTRTEASGPEPMIES*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain