SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g07921

Feature Type:gene_model
Chromosome:Gm04
Start:6184033
stop:6192366
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g07921
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31430AT Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:15248510-15251945 FORWARD LENGTH=485 SoyBaseE_val: 1.00E-45ISS
GO:0000956GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
UniRef100_Q7X776UniRef Annotation by Michelle Graham. Most informative UniRef hit: OSJNBb0022F16.14 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7X776_ORYSJ SoyBaseE_val: 1.00E-20ISS
UniRef100_UPI000233A18BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A18B related cluster n=1 Tax=unknown RepID=UPI000233A18B SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g07921
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g07921 not represented in the dataset
Glyma04g07921 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07921
ParalogEvidenceComments
Glyma06g07966 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07921 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g074900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g07921
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g07921
>Glyma04g07921.2   sequence type=transcript   gene model=Glyma04g07921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCAGGAAAAAAAATTAAAGACCCTACACGAGCATATGCTTTTTGTTATTTAAATAACAAAGGGGGAGAGGCAACATTTTTCCTGGCCCACAACACAGCACACACTGACGATAAAAACAAACATTAAAAGAAAAAAGAAAAAAGAAAAAACGCAATAAACCGAAGATAACCGCTACAACAATCAAACTCGGCGTCTGTTTCCGGGAAGAGAGGTTTTGGAATAAGAAGAGAAGAGAAGAGTGAAGTGGTGTTTGGAACTGAAAATTTGAACTCTCTCTTTAACGAAACAAAAGCACTTTCCACGTGCTTCGATGGCTTCCGTTCCCGGATCTCGATCCGGCGGCAAAATCGTCCGAACGCGCCGGAGCGCCGCCGCGAGGAGCCACACCCCCTACGACCGACCCGCTCCTCCGCCGGAGCCTCCGAGCCCTAATTGGCTCTCGCGTTTCGTTATCTCTCCCTCGCGTTTCATTGCTTCTGGCGCCGGAAAAATCTTCTCCTCTGTTTTGGATCTCGACAATTCTCCTTCTGATTCTTCCTCTGCTACTTGTTCTCTCTCCTCTTCGGCTAACGATTCCGATGCTGAGGAAGTTGGTACTTTCGATGATGAAAATGATAACCCTTCTGAAGGTGATGTGGCGTTGAGCAAGCCTTTTGTCAGGAATAGCAAAAACAAGCATATGATTGAGCAACTACTTATGAAGGAGTCATTCTCAAGGGAAGAATGTGACCGGTTAATAAAAATAATAAGATCAAGAGTGGTAGATCCTGCAAATGATGATGATGGGGATAAGAGGCCAACGGATATGTCCAACAAGATTCTTGGAAGTGATTCACCTGAGCTCCATGATGTTGCCATTATGGAGGCAAAGAAATGGCTGCAGGAAAAGAAGTCAGCATTAGATACAAATACAGATATAGGTTATGGAAGTCTTAGTTTGAACTTGGTTGCATTACCACAAGATCCCAAAGATGAAGGATCACCAGTGGATGTGGCCAAGTCGTATATGTGCACACGCCCTCCATGGGCATCACCTTCTATAGACCATACTAAACCTCAAACACCATCTGGAATTCAGCTATTCAAAGAAGAAACACCATATCTATTTGGCAACAATTCTATGCCATCCTCCAAGTTGAAAAGGGATTCTGCTGCTACTGGTTCATGGAGTATTCAGGATGAAATACGAAGAGTAAGATCCAGGGCAACAGAGGAATTGCTTAGATCACTTCCATCCTCAAAAATTGACTGGTCTGCATTTGCCATGGAGAATAAAAATAATGTAAACTCTTCAGCTATTGAAAATATTGGAGCTAGTTTGGGAGAGAGAGTACATAATTCAACAAATTTAGTTGATGCATCTGTGAACTTGGCCAGAGGCTTAGGTTCTCAGGTCTCTCCAGATTTGGAGAGTAAACTGGATGAATTCCAACCTGAGTCTGTGCTGTCTAATCCAGTTAACACTAATTTTGAACAGAATCAGGGCTCTGTTGCTGTTCAGCAGACCAGAGGTACAGAAGATGGCAGCAGAGAAATAACTACTTCAGGACTAAGAGATGGGTCCTCGGATGATATGCACAGGGATGGCAGTCTGGTTAAAGTCAATGGCATCAGTGACACAAATGGGTCTGGTCATCAGCTAGACTCAGTTGAAGAAACTAGAGATGCTATAAATTCTAGATTACAAGATAGTAACCACTTAGTAATCAAAGAGAAGGTTGGAGCCGAAGATGCATTGGCAAATGGGTTTCCCTCTTCAGGGCCAAGTTTCAATGCAGGGCAGGTTATTGAACAGAACACAAAAACATTGGACAACAAACCCAATACAACCGATTCAAGTCAGGAAAGGACAGCACAAGGTGTTCTTGAGCAAGAGGAGTGTCAGACGTTGCGTGAATCAACGGAGGTGCCTGATGTGATTGGGGATGACTCTGTTGCTGACCGTGTTGCCTCTGGTTCACAGAACAGTTCCAGTATGTATGAGGTTCAACATGATACTTCTCAGCCGGGTGTAGAATTAGGTTTGCCAGCCACACCAACTAGCATTGCTAAGCAAAAGGGAAGAAGAATTACAACCAGATACAACAGAAGGGGCAGGAGCAAGGGTGTCAAATGATGCCTGTTGTATTATGTATGTTAAATTGTAAGTCACTGTTAGCTTAGAAAGTAGGGATTCTGCCAGGTCATTTGTTGTGAGATTAATAATATTCACGAATGAGTCTACGTCAACTTAGGTTTATTTTTTCTTTCATCTGTTCTTTCTTCTTTTTTGGGCGATTACGTTCAGGGAAATCAGGTTCAGGTTCAGGAATTGGAATGTATTTGCTGTATAAAATGGTTAAATTAGCGACATGTTCTTTTTTTCTTTTTTAGCTGGTTAACTAGCTTACACGGATTTATGGGACATGTACGAACTTGTGCAGCCTGAATGAGGCTCCTCCAGGAATCATAACATTTTGTAACATTCCAGTACTCGAATTAGTTTGAGTTTGATGACTTGAAAGGTTTTTTGTATGCATCGTTGTATTTATTTATGTATTTTTAATTTGGAAGAATTGAATGTGGGAATTAGTGGATTAACAAG
Coding sequences of Glyma04g07921
>Glyma04g07921.1   sequence type=CDS   gene model=Glyma04g07921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCGTTCCCGGATCTCGATCCGGCGGCAAAATCGTCCGAACGCGCCGGAGCGCCGCCGCGAGGAGCCACACCCCCTACGACCGACCCGCTCCTCCGCCGGAGCCTCCGAGCCCTAATTGGCTCTCGCGTTTCGTTATCTCTCCCTCGCGTTTCATTGCTTCTGGCGCCGGAAAAATCTTCTCCTCTGTTTTGGATCTCGACAATTCTCCTTCTGATTCTTCCTCTGCTACTTGTTCTCTCTCCTCTTCGGCTAACGATTCCGATGCTGAGGAAGTTGGTACTTTCGATGATGAAAATGATAACCCTTCTGAAGGTGATGTGGCGTTGAGCAAGGGGCTCCAGCCTTTTGTCAGGAATAGCAAAAACAAGCATATGATTGAGCAACTACTTATGAAGGAGTCATTCTCAAGGGAAGAATGTGACCGGTTAATAAAAATAATAAGATCAAGAGTGGTAGATCCTGCAAATGATGATGATGGGGATAAGAGGCCAACGGATATGTCCAACAAGATTCTTGGAAGTGATTCACCTGAGCTCCATGATGTTGCCATTATGGAGGCAAAGAAATGGCTGCAGGAAAAGAAGTCAGCATTAGATACAAATACAGATATAGGTTATGGAAGTCTTAGTTTGAACTTGGTTGCATTACCACAAGATCCCAAAGATGAAGGATCACCAGTGGATGTGGCCAAGTCGTATATGTGCACACGCCCTCCATGGGCATCACCTTCTATAGACCATACTAAACCTCAAACACCATCTGGAATTCAGCTATTCAAAGAAGAAACACCATATCTATTTGGCAACAATTCTATGCCATCCTCCAAGTTGAAAAGGGATTCTGCTGCTACTGGTTCATGGAGTATTCAGGATGAAATACGAAGAGTAAGATCCAGGGCAACAGAGGAATTGCTTAGATCACTTCCATCCTCAAAAATTGACTGGTCTGCATTTGCCATGGAGAATAAAAATAATGTAAACTCTTCAGCTATTGAAAATATTGGAGCTAGTTTGGGAGAGAGAGTACATAATTCAACAAATTTAGTTGATGCATCTGTGAACTTGGCCAGAGGCTTAGGTTCTCAGGTCTCTCCAGATTTGGAGAGTAAACTGGATGAATTCCAACCTGAGTCTGTGCTGTCTAATCCAGTTAACACTAATTTTGAACAGAATCAGGGCTCTGTTGCTGTTCAGCAGACCAGAGGTACAGAAGATGGCAGCAGAGAAATAACTACTTCAGGACTAAGAGATGGGTCCTCGGATGATATGCACAGGGATGGCAGTCTGGTTAAAGTCAATGGCATCAGTGACACAAATGGGTCTGGTCATCAGCTAGACTCAGTTGAAGAAACTAGAGATGCTATAAATTCTAGATTACAAGATAGTAACCACTTAGTAATCAAAGAGAAGGTTGGAGCCGAAGATGCATTGGCAAATGGGTTTCCCTCTTCAGGGCCAAGTTTCAATGCAGGGCAGGTTATTGAACAGAACACAAAAACATTGGACAACAAACCCAATACAACCGATTCAAGTCAGGAAAGGACAGCACAAGGTGTTCTTGAGCAAGAGGAGTGTCAGACGTTGCGTGAATCAACGGAGGTGCCTGATGTGATTGGGGATGACTCTGTTGCTGACCGTGTTGCCTCTGGTTCACAGAACAGTTCCAGTATGTATGAGGTTCAACATGATACTTCTCAGCCGGGTGTAGAATTAGGTTTGCCAGCCACACCAACTAGCATTGCTAAGCAAAAGGGAAGAAGAATTACAACCAGATACAACAGAAGGGGCAGGAGCAAGGGTGTCAAATGA

>Glyma04g07921.2   sequence type=CDS   gene model=Glyma04g07921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCGTTCCCGGATCTCGATCCGGCGGCAAAATCGTCCGAACGCGCCGGAGCGCCGCCGCGAGGAGCCACACCCCCTACGACCGACCCGCTCCTCCGCCGGAGCCTCCGAGCCCTAATTGGCTCTCGCGTTTCGTTATCTCTCCCTCGCGTTTCATTGCTTCTGGCGCCGGAAAAATCTTCTCCTCTGTTTTGGATCTCGACAATTCTCCTTCTGATTCTTCCTCTGCTACTTGTTCTCTCTCCTCTTCGGCTAACGATTCCGATGCTGAGGAAGTTGGTACTTTCGATGATGAAAATGATAACCCTTCTGAAGGTGATGTGGCGTTGAGCAAGCCTTTTGTCAGGAATAGCAAAAACAAGCATATGATTGAGCAACTACTTATGAAGGAGTCATTCTCAAGGGAAGAATGTGACCGGTTAATAAAAATAATAAGATCAAGAGTGGTAGATCCTGCAAATGATGATGATGGGGATAAGAGGCCAACGGATATGTCCAACAAGATTCTTGGAAGTGATTCACCTGAGCTCCATGATGTTGCCATTATGGAGGCAAAGAAATGGCTGCAGGAAAAGAAGTCAGCATTAGATACAAATACAGATATAGGTTATGGAAGTCTTAGTTTGAACTTGGTTGCATTACCACAAGATCCCAAAGATGAAGGATCACCAGTGGATGTGGCCAAGTCGTATATGTGCACACGCCCTCCATGGGCATCACCTTCTATAGACCATACTAAACCTCAAACACCATCTGGAATTCAGCTATTCAAAGAAGAAACACCATATCTATTTGGCAACAATTCTATGCCATCCTCCAAGTTGAAAAGGGATTCTGCTGCTACTGGTTCATGGAGTATTCAGGATGAAATACGAAGAGTAAGATCCAGGGCAACAGAGGAATTGCTTAGATCACTTCCATCCTCAAAAATTGACTGGTCTGCATTTGCCATGGAGAATAAAAATAATGTAAACTCTTCAGCTATTGAAAATATTGGAGCTAGTTTGGGAGAGAGAGTACATAATTCAACAAATTTAGTTGATGCATCTGTGAACTTGGCCAGAGGCTTAGGTTCTCAGGTCTCTCCAGATTTGGAGAGTAAACTGGATGAATTCCAACCTGAGTCTGTGCTGTCTAATCCAGTTAACACTAATTTTGAACAGAATCAGGGCTCTGTTGCTGTTCAGCAGACCAGAGGTACAGAAGATGGCAGCAGAGAAATAACTACTTCAGGACTAAGAGATGGGTCCTCGGATGATATGCACAGGGATGGCAGTCTGGTTAAAGTCAATGGCATCAGTGACACAAATGGGTCTGGTCATCAGCTAGACTCAGTTGAAGAAACTAGAGATGCTATAAATTCTAGATTACAAGATAGTAACCACTTAGTAATCAAAGAGAAGGTTGGAGCCGAAGATGCATTGGCAAATGGGTTTCCCTCTTCAGGGCCAAGTTTCAATGCAGGGCAGGTTATTGAACAGAACACAAAAACATTGGACAACAAACCCAATACAACCGATTCAAGTCAGGAAAGGACAGCACAAGGTGTTCTTGAGCAAGAGGAGTGTCAGACGTTGCGTGAATCAACGGAGGTGCCTGATGTGATTGGGGATGACTCTGTTGCTGACCGTGTTGCCTCTGGTTCACAGAACAGTTCCAGTATGTATGAGGTTCAACATGATACTTCTCAGCCGGGTGTAGAATTAGGTTTGCCAGCCACACCAACTAGCATTGCTAAGCAAAAGGGAAGAAGAATTACAACCAGATACAACAGAAGGGGCAGGAGCAAGGGTGTCAAATGA
Predicted protein sequences of Glyma04g07921
>Glyma04g07921.1   sequence type=predicted peptide   gene model=Glyma04g07921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVPGSRSGGKIVRTRRSAAARSHTPYDRPAPPPEPPSPNWLSRFVISPSRFIASGAGKIFSSVLDLDNSPSDSSSATCSLSSSANDSDAEEVGTFDDENDNPSEGDVALSKGLQPFVRNSKNKHMIEQLLMKESFSREECDRLIKIIRSRVVDPANDDDGDKRPTDMSNKILGSDSPELHDVAIMEAKKWLQEKKSALDTNTDIGYGSLSLNLVALPQDPKDEGSPVDVAKSYMCTRPPWASPSIDHTKPQTPSGIQLFKEETPYLFGNNSMPSSKLKRDSAATGSWSIQDEIRRVRSRATEELLRSLPSSKIDWSAFAMENKNNVNSSAIENIGASLGERVHNSTNLVDASVNLARGLGSQVSPDLESKLDEFQPESVLSNPVNTNFEQNQGSVAVQQTRGTEDGSREITTSGLRDGSSDDMHRDGSLVKVNGISDTNGSGHQLDSVEETRDAINSRLQDSNHLVIKEKVGAEDALANGFPSSGPSFNAGQVIEQNTKTLDNKPNTTDSSQERTAQGVLEQEECQTLRESTEVPDVIGDDSVADRVASGSQNSSSMYEVQHDTSQPGVELGLPATPTSIAKQKGRRITTRYNRRGRSKGVK*

>Glyma04g07921.2   sequence type=predicted peptide   gene model=Glyma04g07921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVPGSRSGGKIVRTRRSAAARSHTPYDRPAPPPEPPSPNWLSRFVISPSRFIASGAGKIFSSVLDLDNSPSDSSSATCSLSSSANDSDAEEVGTFDDENDNPSEGDVALSKPFVRNSKNKHMIEQLLMKESFSREECDRLIKIIRSRVVDPANDDDGDKRPTDMSNKILGSDSPELHDVAIMEAKKWLQEKKSALDTNTDIGYGSLSLNLVALPQDPKDEGSPVDVAKSYMCTRPPWASPSIDHTKPQTPSGIQLFKEETPYLFGNNSMPSSKLKRDSAATGSWSIQDEIRRVRSRATEELLRSLPSSKIDWSAFAMENKNNVNSSAIENIGASLGERVHNSTNLVDASVNLARGLGSQVSPDLESKLDEFQPESVLSNPVNTNFEQNQGSVAVQQTRGTEDGSREITTSGLRDGSSDDMHRDGSLVKVNGISDTNGSGHQLDSVEETRDAINSRLQDSNHLVIKEKVGAEDALANGFPSSGPSFNAGQVIEQNTKTLDNKPNTTDSSQERTAQGVLEQEECQTLRESTEVPDVIGDDSVADRVASGSQNSSSMYEVQHDTSQPGVELGLPATPTSIAKQKGRRITTRYNRRGRSKGVK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo