Glyma04g07860 - SoyBase

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Report for Sequence Feature Glyma04g07860

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6130489
stop:	6134993
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31080	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF2296) \| chr4:15121186-15123072 FORWARD LENGTH=409	SoyBase	E_val: 8.00E-155	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2846	KOG	Predicted membrane protein	JGI		ISS
PTHR22166	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR22166:SF1	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF10058	PFAM	Predicted integral membrane metal-binding protein (DUF2296)	JGI		ISS
UniRef100_G7JCC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein lunapark n=1 Tax=Medicago truncatula RepID=G7JCC0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JUL5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUL5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07860

Paralog	Evidence	Comments
Glyma06g07930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g074400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07860

Limit To All Plant Sequences

>Glyma04g07860.1   sequence type=CDS   gene model=Glyma04g07860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATGATGACAAAGCGGTAGGGGAAGGTGAGAAGAAAGAGACGACGGGTGGTACCAGTCCTTCCGGGAGTGGAAAGAAGAAGAGCAAAGGTTTCTTGTTGCGAATTTGGAACGGGATATTTAGGTTTCACGGCGATGATTTTGAGAAGAGACTCCAATACATTTCTAAAGAGGAAGCTCAAGTTATGACTAGAATGAACAGGAGATCCCGATCCTGGAGGAGAATTTCCCGCCATCTTATTGTATTTTCTGTCATATTTGAGGTAGTTGCTATAGTTTATGCTATTATGACAACAAGATCAATCGATATGAATTGGAAAATGAGGGCAATCCGGGTTCTGCCAATGTTTCTTTTGCCCGCACTAGCAGCTGCTGCCTATACAACGTTTGTCAGCTTCACAAGGATGTGTGATTGCAGGGATCAGAAAATTCTTGAAAGGCTTCGAGCTGAAAGGCAAGAAAAAATTGATGAGCTCAAAGAAAGGACAAATTATTACACTACACAACAGCTCATTCAGAGATATGATCCAGACCCGGCCGCAAAAGCAGCTGCTGCAAGTGTTTTAGCATCTAAGTTGGGTGCAGATTCTGGTTTGAAAGTGTATCTGGGAGATGAATCCAGTCCCGGTGCTTCAATGGGGAGGAGCAATGACATTGAAATTGTGCAGTCCTCTGGACTTCGAAATCGGAGACAAGTTCAATCTAGATCCACTAGTCCAGGGACAACCACACCAAATTTTGCTGATCAACAATTAGTTGGTCCAGGAGGAATCGATCAAACTCAGACTTTTGAGCTCAATCAGCCTGTTGTTGTTGAACATCACCAACCTCGAAGTTCAACCACACAAGACGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGTGAGGATCCAACACAGTCGTATGCTCTCATATGTGGTAACTGCTATATGCATAATGGTCTGGCTCGGAAGGAGGATTTCCCAGTTATCACATACTATTGCCCGCATTGTCATGCCCTGAACAAACCGAAGCAATCAGATGAGCATATCTCTGGTCTTACTTCTCCAAACACGGGGGGGACTCCAAAAACAGACGATGGTGTGGCGGATGCAGTTAAGAATGCTAGGGCTTCTGCAGCCGAGAGTGTAATCACAAGCAGTAGTCCCGGAAGTGCTTCTAGCTCTGAGATTGAGGAAGTATCAGAAAGGGCAAGTGTGGAGGAGAAAGTTGATTAA

Predicted protein sequences of Glyma04g07860

Limit To All Plant Sequences

>Glyma04g07860.1   sequence type=predicted peptide   gene model=Glyma04g07860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADDDKAVGEGEKKETTGGTSPSGSGKKKSKGFLLRIWNGIFRFHGDDFEKRLQYISKEEAQVMTRMNRRSRSWRRISRHLIVFSVIFEVVAIVYAIMTTRSIDMNWKMRAIRVLPMFLLPALAAAAYTTFVSFTRMCDCRDQKILERLRAERQEKIDELKERTNYYTTQQLIQRYDPDPAAKAAAASVLASKLGADSGLKVYLGDESSPGASMGRSNDIEIVQSSGLRNRRQVQSRSTSPGTTTPNFADQQLVGPGGIDQTQTFELNQPVVVEHHQPRSSTTQDGGWIARIAALLVGEDPTQSYALICGNCYMHNGLARKEDFPVITYYCPHCHALNKPKQSDEHISGLTSPNTGGTPKTDDGVADAVKNARASAAESVITSSSPGSASSSEIEEVSERASVEEKVD*

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