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Report for Sequence Feature Glyma04g07810

Feature Type:gene_model
Chromosome:Gm04
Start:6083250
stop:6092605
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g07810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31160AT Annotation by Michelle Graham. TAIR10: DDB1-CUL4 associated factor 1 | chr4:15145936-15152939 FORWARD LENGTH=1883 SoyBaseE_val: 0ISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009880GO-bp Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010072GO-bp Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification SoyBaseN/AISS
GO:0010154GO-bp Annotation by Michelle Graham. GO Biological Process: fruit development SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010431GO-bp Annotation by Michelle Graham. GO Biological Process: seed maturation SoyBaseN/AISS
GO:0010564GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0045595GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048367GO-bp Annotation by Michelle Graham. GO Biological Process: shoot development SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0048827GO-bp Annotation by Michelle Graham. GO Biological Process: phyllome development SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1832 KOG HIV-1 Vpr-binding protein JGI ISS
PTHR13129Panther VPRBP PROTEIN-RELATED JGI ISS
PTHR13129:SF4Panther gb def: ebip9171 [anopheles gambiae str. pest] JGI ISS
UniRef100_Q9M086UniRef Annotation by Michelle Graham. Most informative UniRef hit: DDB1- and CUL4-associated factor homolog 1 n=1 Tax=Arabidopsis thaliana RepID=DCAF1_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI0002339AFCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339AFC related cluster n=1 Tax=unknown RepID=UPI0002339AFC SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g07810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07810
ParalogEvidenceComments
Glyma06g07880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g073900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g07810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g07810
>Glyma04g07810.1   sequence type=CDS   gene model=Glyma04g07810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGGATCAAGCGAATCAAGTGCCACCTCCGCGGGATGAAGAGGAGGATTCTCAGAAGGAGGAAGTGATTGCGAAGGTTAACAAACTCATGGAGAAGATAACTTCTGCACCCGATAACCCTAACGCCACCGTCCTCCACGCCCTTGCCTCTATTCTTGAAGCGCAAGAGTCACGATACATGGAAGAAAATGGTCATTCTTCCTCCATCACTGCACGTGCTGCGCATATCATTGGTCGTCTTGGCGGTTTAATCCGGGAAAATGATGAGTTCTTTGAGTTGATATCTTCAAAGTTTCTGTTAGAAACAAGATACTCGACTTCCATTCAAGCTGCTGCTGGCAGACTTTTGCTGTGCTGTTCCCTCACTTGGATTTATCCTCATGTTTTTGAAGAATCTGTCATGGAAAACATTAAAAATTGGGTGATGGATGATAACACTGGGTTGCCTGCCGAAGAGCAGAATTTGAAGCATAATCCAGATAGAAGGGACGCTGCCTCGGACTCTGAAATGTTGAAAACCTATTCTACTGGACTCCTTGCTGTGTGTTTGGTCGGTCAAGGTCCAATAGTGGAAGACGTATTGACATCTGGCTTGTCAGCTAAGCTAATGCGTTATCTTCGTATAAGTGTGCTACGAGAGACAAGTGGCAACCAGAAAGATGTTACTCATATTACAGAGAGTAGGCATGCATCTGCGAATACTTCAGGGAGAGGTAGAGACGATGGTCGTGGTAGATTTCGCCAGCTCCTCGAATCAAATCATTTAGATGATACTAGGATGATTGACGAGAGATCTTTAGATGATGTAACTCTTGAAAGGGGTCCAGATAGAAGCATTAGTGGACAAACTTGCCAAGAAGGATCTTGGATAGATGGTGAACCACCCGATGGACTTGGTGGTGAAGGTGCTGATGTCCACGAGGTAGATTCTGATGGGGAGGATAGATGGCACTGTAGAGATATACGTGATGGAAGGATAAAATATGGTGAGCACGACGACAATATTAGAGATGACTCTTCAAGGCGGCGTGCAAACCGTGGATGGGGAAGATCTAGAGGGAAAGGTAGGCTCAGTGAAGGGGTTGTAGAAAGTGATCCCATTTTGTCATCTCCTGGATCTGGAAGTCGATTAGGACAGGGGCGAAGTGTTAGAGATAGAAGCATATTGAGGAATGCTGACATTAGGAGGGTGACTGATTCTAAGAAGACCCTTGGCAGGACCACCCCTTCTGAGGCATCTGCTTCTGCTTCAGAAAGAGAGGATAATGATGATTGTTTCCAAGAGTGCCGAATTGGAAGTAAAGATATTACCGATCTTGTCCGGAAAGCAGTCCGAGCGGCTGAAGCTGAAGCTAGATCAGCCAATGCACCTGAAGAAGCTGTGAAAGCAGCTGGTGATGCTGCCGCTGACCTTGTTAAAACTGCAGCTTCTGAGGAATATAAATCCACTAATGATGAAGAAGCAGCTTTTTTGGCTGCTTCGAGAGCTGCATCAACTGTTATTGATGCTGCATCTGCAGTTGAAGTTTCAAGGAGTTCTATCTGCGACAGTACTGTGACAGAGAATGTGAGTGGCAAAGAAATGGAAACTAACGAGGATGTTGAAGAGTACTTCATCCCAGATACTCAATCACTTGCACAGTTGAGGGAAAAATATTGCATTCAGTGTCTGGAGTTACTTGGAGAATATGTAGAAGTTCTTGGCCCTGTGTTGCATGAGAAGGGGGTTGATGTGTGTCTTGCACTTCTGCAGCAGAATTCTAAACATTGGGAGGCATCCAAGGTTGCTTTGCTGTTGCCTGATATCATGAAGCTAATCTGTGCTTTGGCCGCACATAGGAAATTTGCTGCACTATTTGTGGACCGTGGGGGAATGCAAAAGCTGCTTGATGTCCCTAGAATGCCACAAACTTTCTTCGGCCTTTCTTCTTGTCTATTTACTATTGGTTCTCTTCAGGGAATAATGGAACGAGTTTGTGCTCTTCCATCAAAAGTTGTTGAGCGTGTTGTTGAGTTAGCCCTCCAACTCCTTGACTGCAATCAAGACCAAGCCCGTAAGAATGCAGCATTGTTTTTTGCTGCTGCATTTGTCTTTAGAGCAGTTCTTGATGCCTTTGATTCCCTTGATGGATTACAAAAATTACTTGGCCTTCTAAATGATGCTGCTTCAGTAAGATCAGGAGTAAATTCTGGAGCCTTGAGTTTATCTAACTCAGGATCACTTCGAAATGATCGATCATCCGCTGAAGTGCTGACATCATCTGAGAAGCAGATAGCCTATCACACTTGTGTTGCTTTGCGGCAATATTTCAGGGCACATCTCCTTGTATTAGTGGATTCCATTCGTCCAAACAAAAGCAATCGTAGTGCTGCTAGAAATATTCCAAGTGTAAGGGCTGTGTACAAGCCGCTTGATATTAGTAACGAGGCAATGGATGCAGTATTCCTACAATTACAAAAGGATCGGAAGTTAGGTCCTGCATTTGTGAGAACACGTTGGCTAGCAGTTGAGAAGTTCTTGGCATCTAATGGACATATTACTATGTTGGAATTATGTCAGGCCCCACCTGTGGAGCGATATCTGCATGATTTGCTTCAGTATGCGTTGGGTGTTCTGCACATTGTTACATTAGTACCTAGCAGTCGTAAGATGATTGTAAATGTAACATTAAGCAATAATCGCGTTGGTATCGCGGTAATTTTGGATGCTGCAAATATAGCTAGTAATCATGTGGACCCTGAGATAATTCAACCGGCATTAAATGTTTTAGTCAATCTTGTTTGCCCTCCTCCTTCAATCAGCAATAAACCAGCTATGTTTGCACAAGGTCAGCAATTCGCATCTTCCCAAACATCTATCGGTCCTCCCTCAGAGGCTAGAGATAGAAATGCTGAACGTAATGTCTCAGATAGAGCTGTTCACTCTACCAGCCAGATTGATCCTAGGGAGAGGAGTGGGGAGCCCAATGCTGTAGATCGAGGCAGTGCTGCAGGATTTAGTACACAGCCTGTTCATAGTACTCCACAAACTCCTGTTGCTTCTGCATCTTCAGGATTGGTTGGCGACCGAAGGATATCTTTGGGTGCAGGAGCAGGTTGTGCTGGCCTTGCTGCACAATTGGAACAAGGATATCGTCAGGCAAGAGAGGTTGTCCGCTCTAATAATGGTATAAAGGTTCTTCTGCATCTCCTCCAACCGCGCATATATTCGCCTCCTGCTGCTCTGGACTGTCTTCGTGCTCTAGCATGTCGGGTCCTGCTTGGATTAGCCAGAGATGATACTATTGCACACATATTGACAAAGCTTCAGGTTGGGAAAAAGCTATCGGAACTGATTCGGGATTCGGGCAGCCTAACACTTGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAGGCTGCAATTGAGCTAATTGGGATTGTGACTAATTCTGGGCGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCAACTTTAAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCCACTCCTATTTCTTACCATTCAAGGGAACTCCTGCTCCTAATTCATGAGCACCTACAGGCATCTGGATTGGCGCAAACTGCTTCTATGTTGCTTAAAGAGGCTCAGTTGACTCCTTTGCCTTCTTTGGTTCCTCCCTCTTCTCTTGCACAACAACCCATCACACAGGAAGTTTCTTCAACACAAATTCAGTGGCCCTCTGGTCGTGCTCCTTCTGGATTTCTCACTTACAGAGTAATGTTTAATGCAAAGGATGAGGATGCCGGCTTGAAAAGTGATTCTGTCTCTGCAAAGAAAAAATCCCTGACTTTCTCATCATCTTTTCATTCAAGACTTCAACTCCTTGACTCTCAGTCATCAGCCAGGAAATTGTCAAATACAGGTAAAGAGTCATCAGAAACTAGTGTGGTAGAGACTACATATGGATCTTCAGTGAAACATAACATTGATACTGGATCTCAGTTTAAGACTCCAATTACCTTGCCAGCGAAACGAAAGTTATCTGATTTGAAGGATATATCAATGTTTTCATCGTCTGGAAAACGATTAAACATTGGGGATCAAGGACTTCGCTCTCCTATTTGTTCAAGTGCAATTCGTAAAAGCAGCCTGCAGACTGATGCTGTTGGGCTTTTCACACCAACTTGTAACCTGAAACAGAGCCGTTGTACGATTGACTTGGTGGATGAGAACCAGAGTATTTCAAATCTAGGTCAGATGACACCATCTTCCCAAGTATTAAATGACCTTCAGCCCAACAATGCTGAGCGTGTAACATTAGATTCTTTGGTGGTTCAATATTTGAAGCATCAGCATCGCCAATGTCCAGCTCCTATTACCACTCTTCCTCCACTGTCTCTTCTGCACCCGCATGTCTGTCCAGAACCAAAGCGAAGCCTTGATGCCCCTTCTAATGTGACAGCTCGGTTTGGTACCCGTGAATTTAAATATATGTATGGGGGAGTGCATGGGAATCGCAGGGATCGCCAATTTGTTTACAGTCGGTTTAAGCCATGGCGTACTTGTCGGGATGATGCTGGTGCCTTGTTAACATGCATTACATTTGTCGGGGACTCTTCTCATATTGCTGTTGGAAGCCATAATGGGGAGCTCAAATTTTTTGACTCCAACAACAGCAATGTGGTGGAGAGCTACACAGGTCACCAGTCTCCTTTGACTCATGTTCAGTCTTTTGTTTCTGGTGAGACCCAGCTATTACTTTCTTCAAGCTCCCAAGATGTTAGGTTGTGGGATGCAACATCAATTTTAGGTGGTCCTAGCCATTCATTTGAAGGATGCAAGGCTGCCAGGTTTAGCAATTCTGGGAATGTTTTTGCAGCCTTGTCATCAGAATCTGCACGACGGGAAATCCGCTTGTATGATATCCAAACATGTCATTTAGAGTCAAACTTTTCAGATACATTTGCAGCTTCTACAGGGCGAGGTCATGTTTATTCGTTAATCCATTTTAACCCTTCTGACTCAATGCTGCTTTGGAATGGTGTCTTATGGGACCGGCGGGATTCTGGGCCTGTGCATCGCTTTGATCAGTTTACAGACTATGGTGGTGGAGGCTTTCATCCTGCTGGCAACGAGGTTATTATAAACTCTGAAGTCTGGGATCTGCGCAAGTTCAGACTGTTACGCAGTGTACCTTCACTAGATCAAACATCAATAACATTCAATGCACGTGGTGATGTAATGTATGCAATCTTAAGGAGAAATCTTGAGGATGTAATGTCAGCAGTCCACACTCGTCGCGTCAAGCATCCTCTTTTTGCAGCTTTCCGCACAGTGGATGCGATAAATTATTCTGACATTGCAACTATCCCTGTGGATCGCTGTGTTCTTGATTTTGCAGCTGAACCAACAGATTCATTTGTTGGGCTGATTACTATGGATGATCAAGATGAGATGTATGCTTCTGCCAGAATCTATGAAATTGGTCGTCGGAGGCCAACTGATGATGATTCTGATCCTGATGATGCTGAAAGTGAGGAGGAAGACGAGGACGATGATGACGACGATCCTGATGTTGATCCTCTGTTAAGCCCTGGTCTTGGTGGGGATAGTGGGAGTGATGCTGATGACATGAGCAATGATGATGATGATAGTGTGAGTGATCTGGATGAAGATGAAGATGGAGATTTCATTTTGGATGATGTAGACTTTGATGGAGGACCTGGCATATTGGAGATTGTGACAGAAGGTGATGAGGAGGATGATGATAGTCAACTACTTGAATCCCTAAGTAGTAGTGACGATGAGGATTTTGTGGGTAATGGCTTTGGTTATTAA
Predicted protein sequences of Glyma04g07810
>Glyma04g07810.1   sequence type=predicted peptide   gene model=Glyma04g07810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEDQANQVPPPRDEEEDSQKEEVIAKVNKLMEKITSAPDNPNATVLHALASILEAQESRYMEENGHSSSITARAAHIIGRLGGLIRENDEFFELISSKFLLETRYSTSIQAAAGRLLLCCSLTWIYPHVFEESVMENIKNWVMDDNTGLPAEEQNLKHNPDRRDAASDSEMLKTYSTGLLAVCLVGQGPIVEDVLTSGLSAKLMRYLRISVLRETSGNQKDVTHITESRHASANTSGRGRDDGRGRFRQLLESNHLDDTRMIDERSLDDVTLERGPDRSISGQTCQEGSWIDGEPPDGLGGEGADVHEVDSDGEDRWHCRDIRDGRIKYGEHDDNIRDDSSRRRANRGWGRSRGKGRLSEGVVESDPILSSPGSGSRLGQGRSVRDRSILRNADIRRVTDSKKTLGRTTPSEASASASEREDNDDCFQECRIGSKDITDLVRKAVRAAEAEARSANAPEEAVKAAGDAAADLVKTAASEEYKSTNDEEAAFLAASRAASTVIDAASAVEVSRSSICDSTVTENVSGKEMETNEDVEEYFIPDTQSLAQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHWEASKVALLLPDIMKLICALAAHRKFAALFVDRGGMQKLLDVPRMPQTFFGLSSCLFTIGSLQGIMERVCALPSKVVERVVELALQLLDCNQDQARKNAALFFAAAFVFRAVLDAFDSLDGLQKLLGLLNDAASVRSGVNSGALSLSNSGSLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLVLVDSIRPNKSNRSAARNIPSVRAVYKPLDISNEAMDAVFLQLQKDRKLGPAFVRTRWLAVEKFLASNGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNVTLSNNRVGIAVILDAANIASNHVDPEIIQPALNVLVNLVCPPPSISNKPAMFAQGQQFASSQTSIGPPSEARDRNAERNVSDRAVHSTSQIDPRERSGEPNAVDRGSAAGFSTQPVHSTPQTPVASASSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREVVRSNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSLTLGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPISYHSRELLLLIHEHLQASGLAQTASMLLKEAQLTPLPSLVPPSSLAQQPITQEVSSTQIQWPSGRAPSGFLTYRVMFNAKDEDAGLKSDSVSAKKKSLTFSSSFHSRLQLLDSQSSARKLSNTGKESSETSVVETTYGSSVKHNIDTGSQFKTPITLPAKRKLSDLKDISMFSSSGKRLNIGDQGLRSPICSSAIRKSSLQTDAVGLFTPTCNLKQSRCTIDLVDENQSISNLGQMTPSSQVLNDLQPNNAERVTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARFGTREFKYMYGGVHGNRRDRQFVYSRFKPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFDSNNSNVVESYTGHQSPLTHVQSFVSGETQLLLSSSSQDVRLWDATSILGGPSHSFEGCKAARFSNSGNVFAALSSESARREIRLYDIQTCHLESNFSDTFAASTGRGHVYSLIHFNPSDSMLLWNGVLWDRRDSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFAAEPTDSFVGLITMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDDDDPDVDPLLSPGLGGDSGSDADDMSNDDDDSVSDLDEDEDGDFILDDVDFDGGPGILEIVTEGDEEDDDSQLLESLSSSDDEDFVGNGFGY*






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