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Report for Sequence Feature Glyma04g07760

Feature Type:gene_model
Chromosome:Gm04
Start:6061646
stop:6066519
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g07760
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25730AT Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. | chr2:10956751-10972729 REVERSE LENGTH=2487 SoyBaseE_val: 4.00E-82ISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
UniRef100_G7JC99UniRef Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JC99_MEDTR SoyBaseE_val: 5.00E-112ISS
UniRef100_I1JUK5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JUK5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g07760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07760
ParalogEvidenceComments
Glyma06g07850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07760 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g073600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g07760
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g07760
>Glyma04g07760.1   sequence type=CDS   gene model=Glyma04g07760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTTTGTGAATTCTTCTTCACAAGAGGAAGCCATTAGACCTTTGGAACATGCCAAGATGCACTTTGATGAAGGATTGTTTGCAAGGCACAAAGGTGGGGAATCTACTAAGGTTGTCACAAAAGGTCTTAGAGGGAAAAGTGCCTCTAAAAAGCTTACAGAGGAAGGTCTTGTAAAATTTTCTACTCGGGTATCAATCCAGAGACTAATAGATTTAATTTTTAAGTCATTTGATAATTTTAGGGTCAACCATCATTATAGTGCTCTTAATGACTGTAGAATACGAAGGTGTAAAATTGCAGAGGTTCTTGTTGAGAAGAATTTTGATTTGGCATTCCTATTGATCTATGAATTCAATCTTCCTGCTGTTGATATATATGCCAGTGTTGCTGCATCTCTTGCTGAGAGAAAAAGAGGCAGCCAATTGACAGAATTCTTTAGAAACATCAAGGGCACAATAGATGACGATGACTGGGATCAGGTCTTAGGTGCTACAATAAATATTTATGCCAATAAGCATAAAGAGCATCCAGACCGTCTGATAGACATGTTAACTAGCAGCCAAGGGAAGGTTCTTGCTTGTGTAATTTGTGGTCGTTTAAAAATGTGGCTGATGTTCAGTATGTTGCTCATCAGTTATGCACTCACAAAAGGAAAAAGTTGGAAATACTTTTTTCTGGATGGGGACGGGCAATTCGAGACAAACTTATCGGCGCTGCATACAAATGCACTTCCCGTGCCTGATATGTGTTAG
Predicted protein sequences of Glyma04g07760
>Glyma04g07760.1   sequence type=predicted peptide   gene model=Glyma04g07760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LFVNSSSQEEAIRPLEHAKMHFDEGLFARHKGGESTKVVTKGLRGKSASKKLTEEGLVKFSTRVSIQRLIDLIFKSFDNFRVNHHYSALNDCRIRRCKIAEVLVEKNFDLAFLLIYEFNLPAVDIYASVAASLAERKRGSQLTEFFRNIKGTIDDDDWDQVLGATINIYANKHKEHPDRLIDMLTSSQGKVLACVICGRLKMWLMFSMLLISYALTKGKSWKYFFLDGDGQFETNLSALHTNALPVPDMC*






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