Glyma04g07680 - SoyBase

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Report for Sequence Feature Glyma04g07680

Feature Type:	gene_model
Chromosome:	Gm04
Start:	6007865
stop:	6012318
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24350	AT	Annotation by Michelle Graham. TAIR10: syntaxin of plants 32 \| chr3:8837733-8839402 FORWARD LENGTH=347	SoyBase	E_val: 2.00E-153	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005484	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity	SoyBase	N/A	ISS
KOG0812	KOG	SNARE protein SED5/Syntaxin 5	JGI		ISS
PTHR19957	Panther	SYNTAXIN	JGI		ISS
PTHR19957:SF3	Panther	SYNTAXIN	JGI		ISS
PF00804	PFAM	Syntaxin	JGI		ISS
PF05739	PFAM	SNARE domain	JGI		ISS
UniRef100_B9RPA3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin, putative n=1 Tax=Ricinus communis RepID=B9RPA3_RICCO	SoyBase	E_val: 2.00E-159	ISS
UniRef100_I1JUJ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUJ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07680

Paralog	Evidence	Comments
Glyma06g07770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g072800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g07680

Limit To All Plant Sequences

>Glyma04g07680.2   sequence type=transcript   gene model=Glyma04g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAACAAACACACCCTTGACCCAATTTTATTTTTTTTGCACACTCACATATCCTCCTTCGTATCCGTGTCTTCCCCAACCATTCCTTAACCCACCGCAAATTCAAATTCAATTCGAGCTGAACCTAGGGTTAGTCCTATTGCCTTCACCGATCTCGAATTTCGGAAACGGTAAAAGAAAATGCACGTCAAATCGGCGCAGTCATCGTTCCGGGATCGGACACAGGAATTCCACAGCATCACAGAGAGGTTGAAGAAGTCCGGATCAGGGCCCAATGGGCCCAGTAGTAGCAGCACTTCTTCCAGATCGGAGGAACAGCGATCCGCGATCGCGAATCAATCGGAGTTCAATAGAAGGGCCTCCAAAATCGGCTACGGGATTCACCAAACGTCTCAGAAGCTCGCCAAACTCGCCAAATTAGCGAAAAGGACTTCGGTTTTTGATGACCCTACTATGGAAATCCAAGAGCTTACGGGGGTTATTAAGCAGGATATCACTGCTCTGAACTCTGCTGTTGTGGATCTTCAGTTGGTGTGTAGCTCTAGGAATGAGACTGGAAATGTTTCTGCCGATACCTCTAGCCATTCGAGCACGGTGGTCGATGACTTGAAGACACGGTTGATGAGCACCACCAAAGAGTTTAAGGATGTTTTGACCATGAGAACTGAGAATATGAAAGTGCATGAGAATAGAAGACAGTTGTTTTCGTCTTCTGCTTCTAAGGATTCTGCGAATCCTTTTATTCGGCAACGGCCGTTGGCTGCAAGGGCGGCTGCTAGTACTTCTAGTGCCCCTGCTCTTCCCTGGGCTAATGGGTCACCATCTTCATCTCAGGCGTTTCCCAAGCTGGCCCTCTTTCAGACATTGTGTTGTTGGCCTAGCCTGGCCCAACGAAACTCTAGGACTATTGAAACTTTGCCTGGCCAGGAGTATTTGGTGGGTCAAACAGGCTGGTCCAAAATGCATGTAGAGAAGCAGGCTGGCCCACTCAAGACATTTTCCTTTGTTGGGTTGGCTTGGCCCAACAAAAGGGATGGGTGTTGAAATGTCAGGTCTACCCTGCAAACAGTGGACTTCTCAGTCCAAAT

Coding sequences of Glyma04g07680

Limit To All Plant Sequences

>Glyma04g07680.1   sequence type=CDS   gene model=Glyma04g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACGTCAAATCGGCGCAGTCATCGTTCCGGGATCGGACACAGGAATTCCACAGCATCACAGAGAGGTTGAAGAAGTCCGGATCAGGGCCCAATGGGCCCAGTAGTAGCAGCACTTCTTCCAGATCGGAGGAACAGCGATCCGCGATCGCGAATCAATCGGAGTTCAATAGAAGGGCCTCCAAAATCGGCTACGGGATTCACCAAACGTCTCAGAAGCTCGCCAAACTCGCCAAATTAGCGAAAAGGACTTCGGTTTTTGATGACCCTACTATGGAAATCCAAGAGCTTACGGGGGTTATTAAGCAGGATATCACTGCTCTGAACTCTGCTGTTGTGGATCTTCAGTTGGTGTGTAGCTCTAGGAATGAGACTGGAAATGTTTCTGCCGATACCTCTAGCCATTCGAGCACGGTGGTCGATGACTTGAAGACACGGTTGATGAGCACCACCAAAGAGTTTAAGGATGTTTTGACCATGAGAACTGAGAATATGAAAGTGCATGAGAATAGAAGACAGTTGTTTTCGTCTTCTGCTTCTAAGGATTCTGCGAATCCTTTTATTCGGCAACGGCCGTTGGCTGCAAGGGCGGCTGCTAGTACTTCTAGTGCCCCTGCTCTTCCCTGGGCTAATGGGTCACCATCTTCATCTCAGGCGTTTCCCAAGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTGCAACAGCAACAGCAGCAGCAGGAGGTAGTTCCATTGCAAGATAGTTACATGCAAAGCAGAGCTGAAGCACTTCAGAATGTTGAGTCCACTATTCATGAGCTTAGCAACATTTTCAATCAGCTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTAGAGGGAGCACAGGGGGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATCGGTGGTTGATGATCAAAATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG

>Glyma04g07680.2   sequence type=CDS   gene model=Glyma04g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACGTCAAATCGGCGCAGTCATCGTTCCGGGATCGGACACAGGAATTCCACAGCATCACAGAGAGGTTGAAGAAGTCCGGATCAGGGCCCAATGGGCCCAGTAGTAGCAGCACTTCTTCCAGATCGGAGGAACAGCGATCCGCGATCGCGAATCAATCGGAGTTCAATAGAAGGGCCTCCAAAATCGGCTACGGGATTCACCAAACGTCTCAGAAGCTCGCCAAACTCGCCAAATTAGCGAAAAGGACTTCGGTTTTTGATGACCCTACTATGGAAATCCAAGAGCTTACGGGGGTTATTAAGCAGGATATCACTGCTCTGAACTCTGCTGTTGTGGATCTTCAGTTGGTGTGTAGCTCTAGGAATGAGACTGGAAATGTTTCTGCCGATACCTCTAGCCATTCGAGCACGGTGGTCGATGACTTGAAGACACGGTTGATGAGCACCACCAAAGAGTTTAAGGATGTTTTGACCATGAGAACTGAGAATATGAAAGTGCATGAGAATAGAAGACAGTTGTTTTCGTCTTCTGCTTCTAAGGATTCTGCGAATCCTTTTATTCGGCAACGGCCGTTGGCTGCAAGGGCGGCTGCTAGTACTTCTAGTGCCCCTGCTCTTCCCTGGGCTAATGGGTCACCATCTTCATCTCAGGCGTTTCCCAAGCTGGCCCTCTTTCAGACATTGTGTTGTTGGCCTAGCCTGGCCCAACGAAACTCTAGGACTATTGAAACTTTGCCTGGCCAGGAGTATTTGGTGGGTCAAACAGGCTGGTCCAAAATGCATGTAGAGAAGCAGGCTGGCCCACTCAAGACATTTTCCTTTGTTGGGTTGGCTTGGCCCAACAAAAGGGATGGGTGTTGA

Predicted protein sequences of Glyma04g07680

Limit To All Plant Sequences

>Glyma04g07680.1   sequence type=predicted peptide   gene model=Glyma04g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHVKSAQSSFRDRTQEFHSITERLKKSGSGPNGPSSSSTSSRSEEQRSAIANQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLVCSSRNETGNVSADTSSHSSTVVDDLKTRLMSTTKEFKDVLTMRTENMKVHENRRQLFSSSASKDSANPFIRQRPLAARAAASTSSAPALPWANGSPSSSQAFPKKQVDGESQPLLQQQQQQQEVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA*

>Glyma04g07680.2   sequence type=predicted peptide   gene model=Glyma04g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHVKSAQSSFRDRTQEFHSITERLKKSGSGPNGPSSSSTSSRSEEQRSAIANQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLVCSSRNETGNVSADTSSHSSTVVDDLKTRLMSTTKEFKDVLTMRTENMKVHENRRQLFSSSASKDSANPFIRQRPLAARAAASTSSAPALPWANGSPSSSQAFPKLALFQTLCCWPSLAQRNSRTIETLPGQEYLVGQTGWSKMHVEKQAGPLKTFSFVGLAWPNKRDGC*

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