Glyma04g07650 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g07650

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5994242
stop:	5997137
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25670	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink). \| chr2:10929062-10930619 REVERSE LENGTH=318	SoyBase	E_val: 2.00E-54	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B9DH39	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT2G25670 protein n=1 Tax=Arabidopsis thaliana RepID=B9DH39_ARATH	SoyBase	E_val: 2.00E-57	ISS
UniRef100_I1JUJ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUJ5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07650

Paralog	Evidence	Comments
Glyma06g07750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g072600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07650

Limit To All Plant Sequences

>Glyma04g07650.1   sequence type=CDS   gene model=Glyma04g07650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGAGGTGGAAACAGGAGGGAGGAAGGGTCGTTGGTGTTGAACAACACGAACGTGTTTGCGGCGCTGGATACTCTGAAGAAGAAGAAGAAGTCCGATAAGGAGAAGAGCAAGGGTTCGTCGACAAAATCGCAGGCCCAGTCCGCGAAGGCCGAGGCCCAAGTGTTTTGGGCCCCGGCGCCGCTGAACGCCAAGTCTTGGGCCGACGTCGACGACGAGGACGACGACGATTACTACGCCACCACGGCGCCGCCCCAATCGGTGTGGGGCGTTTCCGAACCTCATCACAGTAAGGAGGACAAACATGGGAATTTTGAGGATAGTGAGAGTGAGGAAGATATTTTGGATGAAGGGGATGATGAGGTGGAGGAAGAGCATGATCATGAACCCGAAGAATCTTTGAAACCCGAACCTGAGGTTAAGAAGGATGCTGAAGTCCCTTTGCCACCACCAAAAGAGACAGAAAGGCAGCTCTCTAAAAAGGAAAGGAAGAAGAAGGAACTTGCAGAGCTTGAGGCTCTTCTAGCTGATTTTGGAGTGGCACCAAAACAAAGTAAAGATGGTCAAGATGAGTCTCAAGGTGCTCAGGATAAGACAGGTGTTGAGACTGATGGAGATGGAGAAAAGAAAGAAAATGTCCCTGCAGAATCCAAAACTTCCAAGAAGAAGAAAAAGAAGGATAAAGCTTCCAAGGAGGTGAAAGAATCTCAAGATCAACCCAACAGTTCTGACACAAACAATGGGCCCGATTTGGCCACAGGCACCGAAAATGTGGAGGAGGATACATCTACTGTTGATGTGAAAGAGCGTCTCAAGAAAGTTGCTTCTACAAAGAAGAAGAAGTCTAGTAAAGAAATGGATGCTGCTGCAAGAGCTGCTGCTCAAGAGGCTGCTGCAAGGAGTGCAAGGCTTGCTGCTGCAAAGAAAAAAGAGAAGAACCATTATAACCAGCAACCCATCCGGTAA

Predicted protein sequences of Glyma04g07650

Limit To All Plant Sequences

>Glyma04g07650.1   sequence type=predicted peptide   gene model=Glyma04g07650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGGGNRREEGSLVLNNTNVFAALDTLKKKKKSDKEKSKGSSTKSQAQSAKAEAQVFWAPAPLNAKSWADVDDEDDDDYYATTAPPQSVWGVSEPHHSKEDKHGNFEDSESEEDILDEGDDEVEEEHDHEPEESLKPEPEVKKDAEVPLPPPKETERQLSKKERKKKELAELEALLADFGVAPKQSKDGQDESQGAQDKTGVETDGDGEKKENVPAESKTSKKKKKKDKASKEVKESQDQPNSSDTNNGPDLATGTENVEEDTSTVDVKERLKKVASTKKKKSSKEMDAAARAAAQEAAARSARLAAAKKKEKNHYNQQPIR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain