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Report for Sequence Feature Glyma04g07590

Feature Type:gene_model
Chromosome:Gm04
Start:5939948
stop:5941433
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g07590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28480AT Annotation by Michelle Graham. TAIR10: DNAJ heat shock family protein | chr4:14073310-14075091 FORWARD LENGTH=290 SoyBaseE_val: 8.00E-93ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0031072GO-mf Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
PTHR24077Panther FAMILY NOT NAMED JGI ISS
PTHR24077:SF88Panther JGI ISS
PF00226PFAM DnaJ domain JGI ISS
PF01556PFAM DnaJ C terminal region JGI ISS
UniRef100_B9S2E0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Curved DNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9S2E0_RICCO SoyBaseE_val: 4.00E-93ISS
UniRef100_UPI0002339AF6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339AF6 related cluster n=1 Tax=unknown RepID=UPI0002339AF6 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g07590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g07590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g072000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g07590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g07590
>Glyma04g07590.2   sequence type=CDS   gene model=Glyma04g07590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTGGATTACTACAATGTGCTGAAGGTTAACAGAAATGCTTCGGAGGATGATCTGAAGAAAGCGTACAGAAAGTTGGCCATGAAATGGCACCCTGACAAGAACCCCACCAACAAAAAAGAAGCAGAAGCAACTTTCAAACAGATCTCTGAGGCTTACGAAGTACTGAGCGACCCACAAAAGAGGGTGGTTTATGATCAGTATGGAGAGGAAGGGCTGAAAGATAGGCCACCACCAGGTAATGAACCGGCATCAAGTGGGTTTAATCCCAGAAACGCAGAGGATATATTTGCAGAATTCTTTGGAAGTAGCCCTTTTGGATTTGGATCATCAGGGCCAGGAAGGTCCAAGAGGTTCCCATCTGATGGAGGGGCAACAACATTTGGTGGATTCAGTGCAACTGACAATAATTTTCGAACGTATAGGAATCAGCAACCAAATCACTGGGCAGCAGACCTTGTGTTTGTGATTGATGAGAAGCCTCATGATTTGTTCAAGAGAGATTGCAATGACCTCATTGTGAGCAAAAGGGTGTCACTGGCAGAGGCCATTGGAGGAACCACAATAAATCTCACGGCACTTGATGGACGCAGTTTGAGTATCCCAGTCAGTGACATAGTGAGCCCTGGTTATGAGATGAGTGTAGCAAATGAAGGGATGCCAATAACAAAGGAGCCTGGTCATAGGGGTGATTTGAGGATCAAATTTGATGTGAAGTTTCCAACAAGGTTGACCCATGAGCAACGAGCAGGACTCAAACGAGCACTGGGAAGTTGA
Predicted protein sequences of Glyma04g07590
>Glyma04g07590.2   sequence type=predicted peptide   gene model=Glyma04g07590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLDYYNVLKVNRNASEDDLKKAYRKLAMKWHPDKNPTNKKEAEATFKQISEAYEVLSDPQKRVVYDQYGEEGLKDRPPPGNEPASSGFNPRNAEDIFAEFFGSSPFGFGSSGPGRSKRFPSDGGATTFGGFSATDNNFRTYRNQQPNHWAADLVFVIDEKPHDLFKRDCNDLIVSKRVSLAEAIGGTTINLTALDGRSLSIPVSDIVSPGYEMSVANEGMPITKEPGHRGDLRIKFDVKFPTRLTHEQRAGLKRALGS*






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