Glyma04g07580 - SoyBase

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Report for Sequence Feature Glyma04g07580

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5933403
stop:	5939200
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11430	AT	Annotation by Michelle Graham. TAIR10: SPOC domain / Transcription elongation factor S-II protein \| chr5:3648469-3652256 FORWARD LENGTH=873	SoyBase	E_val: 1.00E-156	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1634	KOG	Predicted transcription factor DATF1, contains PHD and TFS2M domains	JGI		ISS
PTHR11477	Panther	TRANSCRIPTION ELONGATION FACTOR S-II	JGI		ISS
PF07500	PFAM	Transcription factor S-II (TFIIS), central domain	JGI		ISS
PF07744	PFAM	SPOC domain	JGI		ISS
UniRef100_G7JBQ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription elongation factor A protein n=1 Tax=Medicago truncatula RepID=G7JBQ4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339AF5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339AF5 related cluster n=1 Tax=unknown RepID=UPI0002339AF5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07580

Paralog	Evidence	Comments
Glyma06g07700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g071900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07580

Limit To All Plant Sequences

>Glyma04g07580.2   sequence type=CDS   gene model=Glyma04g07580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATGGCTCAACTGGAGCCCCTTATGAACAAGGTTGATTCATCAGGGAGACAGGTGGAAATGGGGCTCTTGGGTCCTGTATCCAGTGATGTTATTGTGTCACAGTCGCAGGGAACCTCGAATGAGCATGTTGGATTGTTGAGAGCTGTACCTGGTGAAGCAAGTAATCCAGGAATGCATCAAATTCTGTCCGCTAACAAACACTCCATGCTAATGGATATACTTCCAAACAGCTCAGGGCCACAGCAGCAGCCAACAACTCCCAAGCGCAAGGCACCGATGGAATTATTGTCCAGTAGCTCCTTTAACAAGCGGGTTGCACAGATGGGAAGTAGACCTTGGTTGCAGCAAGTACCTAATGTATCAAATAAAGGTTCTCTGCAGATGCAATCCCCATCACATGCCTCTAGGACACAACATTTGGCAGCTTCTAGTAAGAGAAAAACGCAGTTGGATAACACTCCCAGTAAATCTGGGACACCTCGGTCCATGAGTTCTAAAAGTCAAAATACACAGATGAAGCAGTCCTCCAAGGTTCAAACTGAATCATCTGATAGTGTTAGGTCCAAGATGAGAGAGTCTTTAGCTTCTGCTCTGGCCTTGGTTTGTCAGCAAGGTAAACTTCAGCTCCCAAACAATAATACACCAAATGATGCTGCCAATAGTCAGGGTAAATTAGAGAACAGCTCTCAATGTGCTGGATCAGCACCTGCTTCCATTGATGCTTCACTGGAGCAAAGGAAGGATATTTCTCAATCAGTTAATTCTTCTTTTGCTGATGCTGATTCAGTTGGCAATGTGGTGGGAGAGCACATGCAAAGTACAGCTTATGAAGATTTTCCAGAAAAATACAAGGACTACGAAGCAGGACCCACAAACACATCAAACAATGAAAGCATACTGAGTTCTATGCATGTCTTGAACCGTGATAAGCAAGATTTCCAGTCAAGTTACTTTTTGACTACTGATGCTGTTTCTTTCAGTGACGGTTTCTTTATGAAAGATGATCTTTTACAGGGAAATGGTCTTTCATGGGTATTATCTGATATGGTCGATGTGGGAAATCAAAGGGAAAGTCAAATTAATATAGAGCAGAGATCAGAACCTGAGGAATCAGGTGGAGGTTGTAGGGTGGAGGTCCCTTTGCCTAAACTTTTGGCATCAAGAATAGAGGCAGAACTCTTCAAACTGTTTGGAGGTGTGAATAAGAAGTACAAAGAAAAAGGGAGGTCTCTTTTATTCAATTTAAAAGATCACAATAATCCTGAACTTAGAGAAAGGGTCATGTTTGGTAAAATTCCTCCAGAACAATTATGTTCTATGACAGCTGAGGAACTTGCTTCAAAGGAGCTCTCTCAGTGGCGGATAGCCAAGGCTGAGGAGCTTGCTCAAATGGTGGTTTTACCTGATTCAGATGTTGATTTTAGACGTTTGGTCAAGAAGACACATAAAGGTGAATTTCAAGTGGAAGTTGAACATGAAGACAATGTCCCTGTGGAGGAGGTTTCAGGTGGCACAACCTCTGTGGCTCAAAGCCAAACAATAAAAAAGGATGTGGAAGATGCTTCTCCTTCCAAACCTGATGTGAACACTGATGGTGAGAAGGGAAATTTACAGAAGGATGATACATTTTCCATTACCATTTCTTCCAACGACGGGGCTGATCCCATGCAAGGGCTTATGACTGATGATGCATTAAAGGACCCTGACTTTCTTCCACCTATTGTATCTCTTGATGAATTCATGGAATCTCTTCATTCTGAGCCACCATTTGAAAATTTACCAGTAGAATCTGGGAAAGTGACACCTACCTCAGACAAGGATGATTCTGGGGTTGGATCTAAATCTAAATCTGCTGATTTAACACCAAATGAGCAAGCTGATGTCAACGCTGATAATAAGTCTGAGAAGTTTCAGAGCACGCGTGTGAATTCAGATGCTGAAAAGGAGAAAAAGATTAATGCTGAATCTGGGGCCATTTCTTCTGATGCGGGATACTGTGGGAGTCAAGCTGACATGAAGTCAACTGATGGTCATACCAAGGAAAGGTCAACTGATGATGTGAAGTCTGCTTCTAGCGATGCTGAGTTGAGAGGCAATCAGTTTCATCTGGAAGAGAGATATGGTAATAATAATAGGTACTCAAAGGATGCAGTTCTCACTAAGGGTGAATGCCTCTGGGAGGGAATGCTTCAACCAAATATCTCTAGCACTCATTCAGTCGTAAGCATCTTTAAGAGTGGTGAGAAAACTGCTGCTGAAGACTGGCCTGGGTTTCTTGAGATCAAGGGAAGGGTGCGATGTGATGCATTTGAGAAATTTCTGCAAGACCTTCGACAGTCCAGAAGTCGGGCAATCATGGTTTCACATTTCGTTTCCAAAGAGTCGGATGATCAATCAACTCTCAGTGAGGTGGCTGACTCGTACGTTTTGGACGAGAGAGTAGGGTTTGCTGAGCCTGCCCCTGGAGTTGAACTTTACTTTTGTCCACCTCATAATAAAACAGTTGAAATGCTCTGCAACATAATTCCAAAGGAACAAATTGAGGAAGTTAATTCTATTGATAATGGCCTAATTGGTATTATTGTATGGAGAAAAACTAATTTAACTTCGTCTATATCACCCACCACTGAATCACATCACAAACATAGCTCTAAAAGACAATACTTCAGTAGGAGACAGCAAGATATAAATATGAATGCCAATTCTACCCTTAAAGCAGTGCCCTCTATGGGTGTTAAGATGACTGAGAATGATGATGATGACGTGCCTCCCGGATTTGGGCCACCAGTGGCCCAAGTGGAGGATGACCTGTCAGAGTTTAGTTTCTGTTCAAATCCATCACACTTGGGTCAAAAACCAATGGGGTCATCAAATGTGGTCCCATTACACCCGGTTAACCCAGCTCCACCATGCCCTGCAGAACAAATGAGGGAACTTGTACACAAATATGGGCAAAACAAACCAAATGTACCTTCGATAAACTGGCAGGATAAATTTGGGGGAACAATTCAACCCTGGAATGATGATGATGATGACATACCTGAATGGCAGCCCCAAAACTCCCAGAATCAGTTTCCTCCCCAACAGACAATGCACAACTTTCATCTTAGACCTCACATTTTGAATCAATCATTTCCGGGTTCACAGCAACAGCCAATCATGACACCACAATATCTGCAACCCCCAATGAATGTGACCCATGGCCAACGAAATTTTGACCCTCAGGGGGTTCCTTCTCCACAGGGTAGCAACCTACAGCCAAGAGGTGGACCACCCTATGCGCAAGGCACTACCTGGCCTCAACATGCGTCTAGCAGTACAGGATATTAG

Predicted protein sequences of Glyma04g07580

Limit To All Plant Sequences

>Glyma04g07580.2   sequence type=predicted peptide   gene model=Glyma04g07580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQMAQLEPLMNKVDSSGRQVEMGLLGPVSSDVIVSQSQGTSNEHVGLLRAVPGEASNPGMHQILSANKHSMLMDILPNSSGPQQQPTTPKRKAPMELLSSSSFNKRVAQMGSRPWLQQVPNVSNKGSLQMQSPSHASRTQHLAASSKRKTQLDNTPSKSGTPRSMSSKSQNTQMKQSSKVQTESSDSVRSKMRESLASALALVCQQGKLQLPNNNTPNDAANSQGKLENSSQCAGSAPASIDASLEQRKDISQSVNSSFADADSVGNVVGEHMQSTAYEDFPEKYKDYEAGPTNTSNNESILSSMHVLNRDKQDFQSSYFLTTDAVSFSDGFFMKDDLLQGNGLSWVLSDMVDVGNQRESQINIEQRSEPEESGGGCRVEVPLPKLLASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDHNNPELRERVMFGKIPPEQLCSMTAEELASKELSQWRIAKAEELAQMVVLPDSDVDFRRLVKKTHKGEFQVEVEHEDNVPVEEVSGGTTSVAQSQTIKKDVEDASPSKPDVNTDGEKGNLQKDDTFSITISSNDGADPMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLPVESGKVTPTSDKDDSGVGSKSKSADLTPNEQADVNADNKSEKFQSTRVNSDAEKEKKINAESGAISSDAGYCGSQADMKSTDGHTKERSTDDVKSASSDAELRGNQFHLEERYGNNNRYSKDAVLTKGECLWEGMLQPNISSTHSVVSIFKSGEKTAAEDWPGFLEIKGRVRCDAFEKFLQDLRQSRSRAIMVSHFVSKESDDQSTLSEVADSYVLDERVGFAEPAPGVELYFCPPHNKTVEMLCNIIPKEQIEEVNSIDNGLIGIIVWRKTNLTSSISPTTESHHKHSSKRQYFSRRQQDINMNANSTLKAVPSMGVKMTENDDDDVPPGFGPPVAQVEDDLSEFSFCSNPSHLGQKPMGSSNVVPLHPVNPAPPCPAEQMRELVHKYGQNKPNVPSINWQDKFGGTIQPWNDDDDDIPEWQPQNSQNQFPPQQTMHNFHLRPHILNQSFPGSQQQPIMTPQYLQPPMNVTHGQRNFDPQGVPSPQGSNLQPRGGPPYAQGTTWPQHASSSTGY*

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