Glyma04g07570 - SoyBase

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Report for Sequence Feature Glyma04g07570

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5922400
stop:	5926557
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32600	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr4:15724010-15725737 FORWARD LENGTH=453	SoyBase	E_val: 6.00E-158	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1493	KOG	Anaphase-promoting complex (APC), subunit 11	JGI		ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PTHR14155:SF27	Panther	OS09G0323100 PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7I5T7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7I5T7_MEDTR	SoyBase	E_val: 7.00E-170	ISS
UniRef100_I1JUI4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUI4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07570

Paralog	Evidence	Comments
Glyma06g07690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g071800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g07570

Limit To All Plant Sequences

>Glyma04g07570.3   sequence type=transcript   gene model=Glyma04g07570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTAAAAAAAAAAGGAAAAGAATTTAGCAAGTGCACAAAACAAAACAAAAAGAAAAAGAGAGAGAGAGAGAGTTAAAAAACAAAAAGCGAAAAAGGAAACGATATTGCGAATTAGGAATTTCATGAGGCGGTAGCAATGCAGGAGGGGATGATGACGAGAATGGGATTGAAAGGCCTATGACTCATTCCAAATATTTTCCCGTTTGAATTATTCCTTGAGTGCGTGATCGTTTTTGAATATCAGTCAACGCGTTAAGAATATAATTAACTTGCTTCTTTCGCTAATTCAGAACCGAGGTTTGGTTTGATAGTTAATTATTCAAGTTGAGGAATAATTTGGAATTGTGATTGTGATGCTTTTGATGAACTCCATGCTTCCTTTGGTAGACTTTTATGGACTTTGTCTCGCCATAGCTACATTCTGAAGCTCCATTTGACACTCACCCCTTGTTGATGGCGCGCCCTACTCATCATGTCATTGACATCACGGGGAGTTCCCGACCTTCCACTTCGTCTTCTTCCACGCCCCATGATAGGCTTGCCAATGATGTGGATTTTGGTGCCTTGAATTCTAGGACTAGAAGGCGAGGGGATACTACGCGTAGTAGGCAGCATAGGAGTCCTTTGAATTCGGGTTTGTGGATATGTGTTGAGTTAGTGATCACAGTGAGCCAGATTGTTGCATCGGTTGTTGTTCTGTCTTTGTCAAAGCATGAGCACCCGCATGCCCCGTTGATTGCTTGGATTGTTGGGTATGCGTCCGGTTGTGTTGCTACCCTCCCTTTGCTATATTGGCGGTATTATCATAATCGTGGTGTTCGGGAGCAAGAGTCGTCTCAGGCCTCTCCGAGGAGTAATGATCCTTCAGGTACACTTCTTTCCGATTCAACGACCAATGGAGGGGAAGATGCTCCGGCATCTTCCAGAACTAGAAGCAATCAAGAGTCGTGGTTGATGAATGCAAGATTGAAGCTACTTGTGGAATACTTCAAAATTGCTGTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAGGTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTTCATTCTCTGTGCAACAATTTGCTGCTGCCTGCCTTGTATAATTTCCATCCTTGGAGTTAGAGAGGATATGGCACAAACCCGAGGTGCATCCTCTGAATCAATTAATGCTCTGCCGACTTATAAGTTCAAAATGAAGAGAAATAAAAGCAAAGGGGAAAGCAACTCAGCTGTTGGTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAGGAACGTATGATCTCTGGAGAAGATGCAGCTTGCTGCATCTGCCTGGCTAAGTATGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCACCTATTTCATAAAGATTGTGTCGACAAGTGGTTGAAGATAAATGCTTTATGCCCCCTTTGCAAGAGTGAGGTTAGTGAGAACGTAAGAGGATCAGTCTCTGGGGTAGATGCCAACCAACATGAGGGTGAAAGCAGGGTTGAGAATGGCCTCACCAACACCTCATCGTAATGTAGTTTATATACATAGAGTCATATACACACTTTGTAGTCTTGTAAAGCTTTTCCTATGCTACCAACTCTTCATTGGATGGATGTTTGATCCTGAGGTCAATCATTCCATTTCATTTTTGTTCATATATTTTCTTTATCTCGCTGGAACTTAAGTTGGCTGATACATGGCTATGGCCTTCTGTATCCTGCTGTTTACGCTGCTGAATTATAAGTGAATGGAAATTATACTTGCAGAGGTTTTGCTTCTCGTAGCTCAGAAGGTTTAAGTTGAATTTTGATGGGAGAGAAAAATGAGGAGAAAGTGGAAAAAGAAAAAGAAAATGAATGATAGAAACAATATTTATGAATGTGAATATCTTGTGTATTTAGTATATATTGACA

Coding sequences of Glyma04g07570

Limit To All Plant Sequences

>Glyma04g07570.1   sequence type=CDS   gene model=Glyma04g07570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCGCCCTACTCATCATGTCATTGACATCACGGGGAGTTCCCGACCTTCCACTTCGTCTTCTTCCACGCCCCATGATAGGCTTGCCAATGATGTGGATTTTGGTGCCTTGAATTCTAGGACTAGAAGGCGAGGGGATACTACGCGTAGTAGGCAGCATAGGAGTCCTTTGAATTCGGGTTTGTGGATATGTGTTGAGTTAGTGATCACAGTGAGCCAGATTGTTGCATCGGTTGTTGTTCTGTCTTTGTCAAAGCATGAGCACCCGCATGCCCCGTTGATTGCTTGGATTGTTGGGTATGCGTCCGGTTGTGTTGCTACCCTCCCTTTGCTATATTGGCGGTATTATCATAATCGTGGTGTTCGGGAGCAAGAGTCGTCTCAGGCCTCTCCGAGGAGTAATGATCCTTCAGGTACACTTCTTTCCGATTCAACGACCAATGGAGGGGAAGATGCTCCGGCATCTTCCAGAACTAGAAGCAATCAAGAGTCGTGGTTGATGAATGCAAGATTGAAGCTACTTGTGGAATACTTCAAAATTGCTGTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAGGTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTTCATTCTCTGTGCAACAATTTGCTGCTGCCTGCCTTGTATAATTTCCATCCTTGGAGTTAGAGAGGATATGGCACAAACCCGAGGTGCATCCTCTGAATCAATTAATGCTCTGCCGACTTATAAGTTCAAAATGAAGAGAAATAAAAGCAAAGGGGAAAGCAACTCAGCTGTTGGTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAGGAACGTATGATCTCTGGAGAAGATGCAGCTTGCTGCATCTGCCTGGCTAAGTATGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCACCTATTTCATAAAGATTGTGTCGACAAGTGGTTGAAGATAAATGCTTTATGCCCCCTTTGCAAGAGTGAGGTTAGTGAGAACGTAAGAGGATCAGTCTCTGGGGTAGATGCCAACCAACATGAGGGTGAAAGCAGGGTTGAGAATGGCCTCACCAACACCTCATCGTAA

>Glyma04g07570.3   sequence type=CDS   gene model=Glyma04g07570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCGCCCTACTCATCATGTCATTGACATCACGGGGAGTTCCCGACCTTCCACTTCGTCTTCTTCCACGCCCCATGATAGGCTTGCCAATGATGTGGATTTTGGTGCCTTGAATTCTAGGACTAGAAGGCGAGGGGATACTACGCGTAGTAGGCAGCATAGGAGTCCTTTGAATTCGGGTTTGTGGATATGTGTTGAGTTAGTGATCACAGTGAGCCAGATTGTTGCATCGGTTGTTGTTCTGTCTTTGTCAAAGCATGAGCACCCGCATGCCCCGTTGATTGCTTGGATTGTTGGGTATGCGTCCGGTTGTGTTGCTACCCTCCCTTTGCTATATTGGCGGTATTATCATAATCGTGGTGTTCGGGAGCAAGAGTCGTCTCAGGCCTCTCCGAGGAGTAATGATCCTTCAGGTACACTTCTTTCCGATTCAACGACCAATGGAGGGGAAGATGCTCCGGCATCTTCCAGAACTAGAAGCAATCAAGAGTCGTGGTTGATGAATGCAAGATTGAAGCTACTTGTGGAATACTTCAAAATTGCTGTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAGGTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTTCATTCTCTGTGCAACAATTTGCTGCTGCCTGCCTTGTATAATTTCCATCCTTGGAGTTAGAGAGGATATGGCACAAACCCGAGGTGCATCCTCTGAATCAATTAATGCTCTGCCGACTTATAAGTTCAAAATGAAGAGAAATAAAAGCAAAGGGGAAAGCAACTCAGCTGTTGGTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAGGAACGTATGATCTCTGGAGAAGATGCAGCTTGCTGCATCTGCCTGGCTAAGTATGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCACCTATTTCATAAAGATTGTGTCGACAAGTGGTTGAAGATAAATGCTTTATGCCCCCTTTGCAAGAGTGAGGTTAGTGAGAACGTAAGAGGATCAGTCTCTGGGGTAGATGCCAACCAACATGAGGGTGAAAGCAGGGTTGAGAATGGCCTCACCAACACCTCATCGTAA

Predicted protein sequences of Glyma04g07570

Limit To All Plant Sequences

>Glyma04g07570.1   sequence type=predicted peptide   gene model=Glyma04g07570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARPTHHVIDITGSSRPSTSSSSTPHDRLANDVDFGALNSRTRRRGDTTRSRQHRSPLNSGLWICVELVITVSQIVASVVVLSLSKHEHPHAPLIAWIVGYASGCVATLPLLYWRYYHNRGVREQESSQASPRSNDPSGTLLSDSTTNGGEDAPASSRTRSNQESWLMNARLKLLVEYFKIAVDCFFAIWFVVGNVWIFGGHSSADQAPNLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDMAQTRGASSESINALPTYKFKMKRNKSKGESNSAVGEGGVVAAGTEKERMISGEDAACCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVSENVRGSVSGVDANQHEGESRVENGLTNTSS*

>Glyma04g07570.3   sequence type=predicted peptide   gene model=Glyma04g07570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARPTHHVIDITGSSRPSTSSSSTPHDRLANDVDFGALNSRTRRRGDTTRSRQHRSPLNSGLWICVELVITVSQIVASVVVLSLSKHEHPHAPLIAWIVGYASGCVATLPLLYWRYYHNRGVREQESSQASPRSNDPSGTLLSDSTTNGGEDAPASSRTRSNQESWLMNARLKLLVEYFKIAVDCFFAIWFVVGNVWIFGGHSSADQAPNLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDMAQTRGASSESINALPTYKFKMKRNKSKGESNSAVGEGGVVAAGTEKERMISGEDAACCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVSENVRGSVSGVDANQHEGESRVENGLTNTSS*

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