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Report for Sequence Feature Glyma04g07551

Feature Type:gene_model
Chromosome:Gm04
Start:5892023
stop:5903302
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g07551
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11300AT Annotation by Michelle Graham. TAIR10: mitotic-like cyclin 3B from Arabidopsis | chr5:3601811-3604466 REVERSE LENGTH=436 SoyBaseE_val: 4.00E-158ISS
GO:0000079GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010389GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0051302GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell division SoyBaseN/AISS
GO:0051510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:2000123GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of stomatal complex development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016538GO-mf Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase regulator activity SoyBaseN/AISS
GO:0019901GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase binding SoyBaseN/AISS
KOG0654 KOG G2/Mitotic-specific cyclin A JGI ISS
PTHR10177Panther CYCLINS JGI ISS
PTHR10177:SF49Panther G2/MITOTIC-SPECIFIC CYCLIN JGI ISS
PF00134PFAM Cyclin, N-terminal domain JGI ISS
PF02984PFAM Cyclin, C-terminal domain JGI ISS
UniRef100_Q39878UniRef Annotation by Michelle Graham. Best UniRef hit: Mitotic cyclin a2-type n=1 Tax=Glycine max RepID=Q39878_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q39878UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitotic cyclin a2-type n=1 Tax=Glycine max RepID=Q39878_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g07551
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g07551 not represented in the dataset
Glyma04g07551 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07551
ParalogEvidenceComments
Glyma06g07665 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07551 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g071600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g07551
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g07551
>Glyma04g07551.2   sequence type=transcript   gene model=Glyma04g07551   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGGTAGAAGTTCACGACATCTCTAGTTTTGAACTGTGTCCCTGTCCCGCCCACTCACTCTGCTGCCTATAACATCCACTCTCATTCTCAAGTCTCAACCCACTTAGCTTTTCTCTTTTCTTTTCTTTAAAGGTTTCAACAAGCAAACACACTCTTTTTAATTTCCCCCCTCTTTCTTTAACTTCTTTTACTCTGTTTCTGAATAGCGCATTCCGAGATATTTTCGTTCTGTTAAGGATGTTTTGTCTTAGTGTATGGATCTTGTCTTGAGCTGCATTGCTTCTTCAAATTTACGTAAATTTCACTTCTTTTGTTTTCTATTGGGTATGAGCAAGATTTTTAGTTGAAGCAATTGGGTTGCTCTTCTCCAAGGCACACACAATGGATAAAGTAAATAGAGTTTGTGCCAAAGATGAAGAGCGTCCACTCCGAATCACCAGAGCAAGAGCTAGAGCCTTGAGAGGGATTACTCCCTACTCAAGACCCTCCTTAAAAAATGAGCAGAAAAACGTGCTTCGAGCTAATTCCAAAAGAGCAGCAAGTTCTGGAAACAAAACTTTTGCGGTTGTTCCTGCTGTTGTCCAGCAAAAGGGAAGGGCAGTGCTTTCAGATATATCAAACATGTGTGCAAAACCACATGATAAGTGTACTAAGGCATCAAAATTTCAGGCCAAAGGAGTTTGTACAAAGAAAAACACCAAGCTTGCAGCCTCAAGTGTTTCCACTGACGTTTCATCCTCACATGACGATGTTAGAGCAAAGTTAGCTGAAGAATTATCCACAATAAAGATGGTTGAATCAAATGACACCTTAAGAGAAGGTGTAACAGCAGACACCTCACTTTCAATGCAAAACTCTGTGAAATCTGATGAACTCCGGAACTCTCCAAACAAAGACATAGATATAATTTGTGAGAAGCTGGGAGCCTCAGACTCCCTGACTATTGTGGACATTGATTCAGAGTTAAAGGATCCTCAACTGTGGAGTTTTTATGCCCCTGACATATACAGCAATATTCGAGTCACAGAGCTTCAAAGGAAACCATTGACCAACTACATGGACAAGTTGCAGAAAGATATTAATCCAAGCATGCGTGGAATTCTGGTTGATTGGCTTGTGGAGGTTTCTGAGGAATACAAGTTGGTTCCAGACACTCTTTACCTGACCGTGAACCTCATTGATCGGTATCTCTCAACAAGACTCATTCAGAAGCAAAAGCTCCAGTTGCTCGGTGTTACTTGCATGTTGATTGCATCAAAATATGAAGAGATGTGTGCACCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTATTGAAAATGGAGAGAGAAGTACTGAATCTTGTGCATTTTCAGTTATCTGTCCCCACAATCAAAACTTTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTATGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATGCAGCTTCTTCCAGTTTCTACCTTCCCTTATAGCTGCATCTGCTGTGTTCCTTGCCAAATGGACCCTGAATGAGTCAGAACATCCATGGAATCCAACTCTGGAGCACTATACAAAATACAAAGCTTCAGACCTCAAAACTGTTGTTCTTGCACTGCAAGATCTGCAACTTAATACCAAAGGATGCTTCCTGAATGCTGTCCGCGAGAAGTATAAGCAACAGAAGTTCAATTGTGTGGCAAACTTGTCTCCAAAATCGGTGCAGTCACTCTTCCAGAACCAAGTGTAAATGTTTTTGGCTGTTCCCTTAAAGACTTTAGAATTTCTGGCACAGTGATGGTTGAAACCATCATCAGTTACATATTTTACCATTCTTTTTTATCATCAATCCCCCACTTAGTGTCTGTTCCGTAATTGTAACATGTAAGATGATCTCAAATTCTGGTTCTTCCAGGTCTCTTTGTTTTGCAAAGGGAAAACTGTTGCGGGATGATACAGTTCAAAGAGTGAGTTGATGTACTAACACCAATTAGAGACTCATTTTAAGGTTCTCATTAAGCAACAAAGTCGTATAGTTCCTTTCAACATTTTGTACCGAAACATTTGTATGTAATTCAAATTACATTACCTACAATTTATTTTTCATTTCTAG
Coding sequences of Glyma04g07551
>Glyma04g07551.1   sequence type=CDS   gene model=Glyma04g07551   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAAGTAAATAGAGTTTGTGCCAAAGATGAAGAGCGTCCACTCCGAATCACCAGAGCAAGAGCTAGAGCCTTGAGAGGGATTACTCCCTACTCAAGACCCTCCTTAAAAAATGAGCAGAAAAACGTGCTTCGAGCTAATTCCAAAAGAGCAGCAAGTTCTGGAAACAAAACTTTTGCGGTTGTTCCTGCTGTTGTCCAGCAAAAGGGAAGGGCAGTGCTTTCAGATATATCAAACATGTGTGCAAAACCACATGATAAGTGTACTAAGGCATCAAAATTTCAGGCCAAAGGAGTTTGTACAAAGAAAAACACCAAGCTTGCAGCCTCAAGTGTTTCCACTGACGTTTCATCCTCACATGACGATGTTAGAGCAAAGTTAGCTGAAGAATTATCCACAATAAAGATGGTTGAATCAAATGACACCTTAAGAGAAGGTGTAACAGCAGACACCTCACTTTCAATGCAAAACTCTGTGAAATCTGATGAACTCCGGAACTCTCCAAACAAAGACATAGATATAATTTGTGAGAAGCTGGGAGCCTCAGACTCCCTGACTATTGTGGACATTGATTCAGAGTTAAAGGATCCTCAACTGTGGAGTTTTTATGCCCCTGACATATACAGCAATATTCGAGTCACAGAGCTTCAAAGGAAACCATTGACCAACTACATGGACAAGTTGCAGAAAGATATTAATCCAAGCATGCGTGGAATTCTGGTTGATTGGCTTGTGGAGGTTTCTGAGGAATACAAGTTGGTTCCAGACACTCTTTACCTGACCGTGAACCTCATTGATCGGTATCTCTCAACAAGACTCATTCAGAAGCAAAAGCTCCAGTTGCTCGGTGTTACTTGCATGTTGATTGCATCAAAATATGAAGAGATGTGTGCACCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTATTGAAAATGGAGAGAGAAGTACTGAATCTTGTGCATTTTCAGTTATCTGTCCCCACAATCAAAACTTTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTATGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATGCAGCTTCTTCCAGTTTCTACCTTCCCTTATAGCTGCATCTGCTGTGTTCCTTGCCAAATGGACCCTGAATGAGTCAGAACATCCATGGAATCCAACTCTGGAGCACTATACAAAATACAAAGCTTCAGACCTCAAAACTGTTGTTCTTGCACTGCAAGATCTGCAACTTAATACCAAAGGATGCTTCCTGAATGCTGTCCGCGAGAAGTATAAGCAACAGAAGTTCAATTGTGTGGCAAACTTGTCTCCAAAATCGGTGCAGTCACTCTTCCAGAACCAAGTGTCTCTTTGTTTTGCAAAGGGAAAACTGTTGCGGGATGATACAGTTCAAAGAGTGAGTTGA

>Glyma04g07551.2   sequence type=CDS   gene model=Glyma04g07551   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAAGTAAATAGAGTTTGTGCCAAAGATGAAGAGCGTCCACTCCGAATCACCAGAGCAAGAGCTAGAGCCTTGAGAGGGATTACTCCCTACTCAAGACCCTCCTTAAAAAATGAGCAGAAAAACGTGCTTCGAGCTAATTCCAAAAGAGCAGCAAGTTCTGGAAACAAAACTTTTGCGGTTGTTCCTGCTGTTGTCCAGCAAAAGGGAAGGGCAGTGCTTTCAGATATATCAAACATGTGTGCAAAACCACATGATAAGTGTACTAAGGCATCAAAATTTCAGGCCAAAGGAGTTTGTACAAAGAAAAACACCAAGCTTGCAGCCTCAAGTGTTTCCACTGACGTTTCATCCTCACATGACGATGTTAGAGCAAAGTTAGCTGAAGAATTATCCACAATAAAGATGGTTGAATCAAATGACACCTTAAGAGAAGGTGTAACAGCAGACACCTCACTTTCAATGCAAAACTCTGTGAAATCTGATGAACTCCGGAACTCTCCAAACAAAGACATAGATATAATTTGTGAGAAGCTGGGAGCCTCAGACTCCCTGACTATTGTGGACATTGATTCAGAGTTAAAGGATCCTCAACTGTGGAGTTTTTATGCCCCTGACATATACAGCAATATTCGAGTCACAGAGCTTCAAAGGAAACCATTGACCAACTACATGGACAAGTTGCAGAAAGATATTAATCCAAGCATGCGTGGAATTCTGGTTGATTGGCTTGTGGAGGTTTCTGAGGAATACAAGTTGGTTCCAGACACTCTTTACCTGACCGTGAACCTCATTGATCGGTATCTCTCAACAAGACTCATTCAGAAGCAAAAGCTCCAGTTGCTCGGTGTTACTTGCATGTTGATTGCATCAAAATATGAAGAGATGTGTGCACCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTATTGAAAATGGAGAGAGAAGTACTGAATCTTGTGCATTTTCAGTTATCTGTCCCCACAATCAAAACTTTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTATGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATGCAGCTTCTTCCAGTTTCTACCTTCCCTTATAGCTGCATCTGCTGTGTTCCTTGCCAAATGGACCCTGAATGAGTCAGAACATCCATGGAATCCAACTCTGGAGCACTATACAAAATACAAAGCTTCAGACCTCAAAACTGTTGTTCTTGCACTGCAAGATCTGCAACTTAATACCAAAGGATGCTTCCTGAATGCTGTCCGCGAGAAGTATAAGCAACAGAAGTTCAATTGTGTGGCAAACTTGTCTCCAAAATCGGTGCAGTCACTCTTCCAGAACCAAGTGTAA
Predicted protein sequences of Glyma04g07551
>Glyma04g07551.1   sequence type=predicted peptide   gene model=Glyma04g07551   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKVNRVCAKDEERPLRITRARARALRGITPYSRPSLKNEQKNVLRANSKRAASSGNKTFAVVPAVVQQKGRAVLSDISNMCAKPHDKCTKASKFQAKGVCTKKNTKLAASSVSTDVSSSHDDVRAKLAEELSTIKMVESNDTLREGVTADTSLSMQNSVKSDELRNSPNKDIDIICEKLGASDSLTIVDIDSELKDPQLWSFYAPDIYSNIRVTELQRKPLTNYMDKLQKDINPSMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRYLSTRLIQKQKLQLLGVTCMLIASKYEEMCAPRVEEFCFITDNTYTKEEVLKMEREVLNLVHFQLSVPTIKTFLRRFIQAAQSSYKAPYVELEFLANYLAELALVECSFFQFLPSLIAASAVFLAKWTLNESEHPWNPTLEHYTKYKASDLKTVVLALQDLQLNTKGCFLNAVREKYKQQKFNCVANLSPKSVQSLFQNQVSLCFAKGKLLRDDTVQRVS*

>Glyma04g07551.2   sequence type=predicted peptide   gene model=Glyma04g07551   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKVNRVCAKDEERPLRITRARARALRGITPYSRPSLKNEQKNVLRANSKRAASSGNKTFAVVPAVVQQKGRAVLSDISNMCAKPHDKCTKASKFQAKGVCTKKNTKLAASSVSTDVSSSHDDVRAKLAEELSTIKMVESNDTLREGVTADTSLSMQNSVKSDELRNSPNKDIDIICEKLGASDSLTIVDIDSELKDPQLWSFYAPDIYSNIRVTELQRKPLTNYMDKLQKDINPSMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRYLSTRLIQKQKLQLLGVTCMLIASKYEEMCAPRVEEFCFITDNTYTKEEVLKMEREVLNLVHFQLSVPTIKTFLRRFIQAAQSSYKAPYVELEFLANYLAELALVECSFFQFLPSLIAASAVFLAKWTLNESEHPWNPTLEHYTKYKASDLKTVVLALQDLQLNTKGCFLNAVREKYKQQKFNCVANLSPKSVQSLFQNQV*






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